RNA id: AMCG00001516


Basic Information

Item Value
RNA id AMCG00001516
length 3689
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00001516
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6779662 ~ 6787020 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCGGGACGGGGCCCACTTGCACAGGGCGAAGAGCAGTAGCGACAAAAACATGGTTGCGAAGAAGATCAGAACCGAGTACATGAAGAAATTCAAAGACCCCAAATGGGAGACCTACTCCAAGTGTTACGAGGACATGCTGCGGTACCGGACGACCCGCAGGCTGCTGGAGCACGCCCACAACCCGTGGTTCTGGGAAGGCTGGGAAAGTGGCTCGGAGTCGAGCGGCAGCACTAGCCCGCAGAACCAGAACAAAGTGGAGCCGCTGAAACTGAGCGGAGAGTCGCCCAAGGAGGAGGCGGGAGAGCGGCCGGGACGGGCTACTGTGATTGCGGAACCGGCTCAAAACGGCAAGTCTCCTGCAGGGGAGTCCAAAGGCAAAGCAGGGTCCCCCAGTGGTCCCGTGGAGCCCGAGCAGAGCGGGGCGGCCCCTTCCACCTCCCGGCCCCCTCGCAAAGCGGCAAAGGGCAAGAGCCAGCCCCGGGAGTCTGCAGAGCCCGAGAAGGAGAACAAACACCCGTTCGCTCTGTACGGCTGGGCCGAGAAACAAGCCGAGACCGGCCTCAAGAAGACGCACAATGTACGGCCTGCAGCATCCACCAAGGAGATCCACGCGTCTGCGCTGCGGGCCAAGACCAGGCGGGAGATCGAGAAACGTGTGAAGACCCTGGAGAGGAGACGGGTGCGCTCCGCTGAGCCGGAGAACGGCCCCAAAGCCAAGCAGCCGCCCGCCGATAACCCTTGGATGACCGAATATATGAGGTGCTTCTCGGCGAGGTCTCGGTAAAAGCCGGCAGCAGGGCGTTTGCTGGTGGTAAGGTGCAGCACAGCAGTCAACACCCTCAGTCGAATTTCTCACGTCAGCATTTCCACAGCGTTTGGTTTGTTGTCCACAGGGTCAACTGCCAGGTACTCACAGGGAAGTCAAGTTATTGCTCAGAAAAAGTGAAGTAGGTGTTCAGGATTCACTGGGACTTACTTCCAGCTCTATTACAACTTAGAAACATGCTTTGCTAACGTTtacaattttgttaatttaatttaaagttgttgtttttttgttttcatgcttaTGTGACCAATGTCGCATTTCAAAGATTTACCTTCTTTGAGCTCGGCAGAACAGAAATTGTAGCTtaagattaatgttttattatttttttccagagccatatagttttattttattatttatttgtctttatattaatatttaccaACAGTATTTCTCGGCTTCATATCAAGATAATGTTCTGCACTATGTACAACAATGTACCCATCTGAAGTGACATTTATCTCTTGAGCAGTGAGTTGGCATCAATCAGAAACGCCAGTGAGTCATGCAGTGTGTATACTGCAGGAATAACATTACATAAGTGGGAGAAAGTGATTAAATAGTTTGGACGTGAAATTAAAACCCCGTtgtccaaataaaataaaaatctgaaatctgacaAAATATCCCAAAATAAGAGCTGCACACTTCCACTCAGTCACAGACCATTTTGTCAAACTTTGGCAACTGAAAGACTGTATCTGTGGTAGACAATCTTTTTCtcataaaatttaaataaagagaaaaacaaaaagcatgttcAAAGGGTGGAAGGCAGTCACATGTTGATAGTTTGCCACGatccttatgttttttttaaggatgtttAAACTTTTGTCCATAACTACCATTATAAAGAAATACTGAAGACGATACTGGAAATCCCACACTACCTCACAAGACTGACTTTAAGTgctgattttttatttccagataGTGTCTTGGGGAAATTATGGACTTTAAaccaattataaattatatatggtcttcaatttatataattatacattaattactAGAATACCTCTGAATTTTCCACTTACTAACATTTACACCTGAAACAGATGCTAATATTCAGAACTAAAATCAGGGTTGTTATACTTATTTCCTTTCttccattttatattttctatgatttgtacatttacagtaaagacagatataatttgttttagtcCAAAAGATATTCCAGGTTCACTTTCAACACGTTGCTGGGAACTCTATTAGCTTAAAACAAAAGTTACGTCTTGAATAAATGATGATAATTGCTCAGTTTAATTCAggacaaaatgaacaaaacctgtccaactgtttattttatataagtattaatatttatttagctCCATTTGTGCCAGCCTATTTTAAAGACTGACTTACTGTTCCTTGCTGATCAAAAGAAACCTTTAATTAAGACACAATATTcagtactttttgttttgtttttaattcaccaTCTATCATATTTGTTGATGACTTCCAATACTTTTTTGTCCAGTTTTCTAGTGGCATGTTGTTTGAAAAGCAGTGTTacagaaaaatgtttattaaatataatattttttaaaaggcatgTTACTGTCAAAGCCTGGATTTCTGACCATTTGCAGTCTGTGTGggcatttttttataataagccatttaatcaatgtttttatcCAAATTGACTTAGTGGGGTGAACCAAAAGGGGAGTCACTTACAAAAGGACCTTGGATTTATTTCTTAGCCAAAGAACAGAGCACAAATAAGTACGGTAACTTGCTCAGGGTAACACATAGCCAAACAACAGTGTCTCCAGTCCAATCAGGATTacacaaatgagaaaaatatgaGACACGTCTAGATTTGActcattttaaaagctgtattaATGCGTTTATCTTCTTTAATGAATGTATAGACAAAGCAGGGTTCAAATACAAGTTTACAGATGCTGTGCTTCCAAGCTGTGCAGGGCTCAGATTTTGTAGTGATGTTGCCACATTTTCAGGATTGACAGTAACATACCTAACTTTGTCTGTTTAGTATCGGTATCTtttgttatattgtattgtaaatgcaCTAATTGGTCTTGCTTTCTCAAGGGTGGCTTCAAAACCTCCCTAATAGTGTTTTTTCACTGCTTGAAACCTACACCTATCTTTAATAATAGTACACAGGATAATTATAAAGACAATGAATGCATTCCAGTTCTTGCAAGACTTATGTTAGCACAATTACACGTGAGGGCCAAGTGGAACACATTCCCagagattgtattttttattttgaattgggAGTTATGCTATTGAAAAACTGTGTAGTCTTGTTGGGAAAGTGTCCGCAGCAAACTGACACGTCTGTCGGCGTTCAAATTTAGGCAGAGAAGATGTCACACGGAATCAACGGTATCTTCTTGTGGCAAAATATGGCCACACCAGGAATGTACTTAGCAAGCCTCTTTAGAATGACACAGGTCATCATGAATTGGGAGTTCAAAGCACTTTATAGTTGCcttgtcatttatatttttacacctATGTATTTAAATCACTGATGTTTACAGGCACATTAAAGATCATTCTCAAAGGGTCAGCAAGATGTTTAGCACTTTGCGTTGTTTATTAGGTCTATAGAACACATCTCTGGATAGCAGAGCTTAGTgattgtgttgtgcagtgcaATGCTGGATAGGCTTAAACTTGTTTTAAGTGGTGGACCAAGATGATGTTAGAAGATGATAGTGTTTCTGGGGTTGGACTTTTTGataactgtatttgtatttcaatcaaCAAAtcgtgtgtgtttatttttggtctACACTATGTAGGTTTgataaatgtgtattgtttggaataaatcacttttaaatGGT

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0048666 neuron development biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0007420 brain development biological_process
GO:0060296 regulation of cilium beat frequency involved in ciliary motility biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0036064 ciliary basal body cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component

KEGG:

id description
K16454 CCSAP; centriole, cilia and spindle-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199387 lncRNA upstream 270032 6509294 ~ 6509630 (+) True G158364
TU199361 lncRNA upstream 357427 6422000 ~ 6422235 (+) True G158342
TU199355 lncRNA upstream 369105 6409021 ~ 6410557 (+) True G158337
TU199346 lncRNA upstream 381474 6396920 ~ 6398188 (+) True G158332
TU199234 lncRNA upstream 887416 5892046 ~ 5892246 (+) True G158230
TU199470 lncRNA downstream 384 6787404 ~ 6788972 (+) True G158435
TU199603 lncRNA downstream 241167 7028187 ~ 7036066 (+) True G158539
TU199613 lncRNA downstream 268828 7055848 ~ 7056061 (+) True G158548
TU199625 lncRNA downstream 371230 7158250 ~ 7160609 (+) True G158555
TU199643 lncRNA downstream 382513 7169533 ~ 7169767 (+) True G158571
AMCG00001519 mRNA upstream 2976 6772496 ~ 6776686 (+) True AMCG00001519
AMCG00001518 mRNA upstream 8762 6753731 ~ 6770900 (+) True AMCG00001518
AMCG00001517 mRNA upstream 26769 6743705 ~ 6752893 (+) True AMCG00001517
AMCG00001515 mRNA upstream 37722 6736097 ~ 6741940 (+) True AMCG00001515
AMCG00001507 mRNA upstream 188372 6563808 ~ 6591290 (+) True AMCG00001507
AMCG00001522 mRNA downstream 74171 6861191 ~ 6863384 (+) True AMCG00001522
AMCG00001528 mRNA downstream 84744 6871764 ~ 6874095 (+) True AMCG00001528
AMCG00001529 mRNA downstream 150327 6937347 ~ 6943146 (+) True AMCG00001529
AMCG00001531 mRNA downstream 213421 7000441 ~ 7010715 (+) True AMCG00001531
AMCG00001532 mRNA downstream 224885 7011905 ~ 7015337 (+) True AMCG00001532
TU199345 other upstream 383702 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 878664 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 908512 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 1156986 5597257 ~ 5622676 (+) True AMCG00001486
TU199079 other upstream 1396598 5381690 ~ 5383064 (+) True AMCG00001480
TU199525 other downstream 87748 6874768 ~ 6876578 (+) True G158478
TU199601 other downstream 236368 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 884294 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 884294 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 949495 7736515 ~ 7737890 (+) True G158672

Expression Profile