RNA id: AMCG00001517


Basic Information

Item Value
RNA id AMCG00001517
length 4055
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00001517
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6743705 ~ 6752893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGGGTGACCTTAACTTCTGCAGAAGCGGTTTCGGAGGGGCGTGCTCGGCGTTTTGGTGGGCGTTGCACCCATTTCGCGTTATTATCACATCTGTTTCCAATGTGCTGGGGAGAGATTGCAGAGGAGATGCGGGGGGGATCTGGCAGCGCAGTGTGATGCGCCGCTCGGCTGGAGGCAACATGATAAGAGCCCGACCGCGACAGATAGGCTGGATTGCAACCGACACCAAAGTCACAATGATCGGAGCAGCGCCTTCACTGCCTTCCCTGCTCTGAGGAGAAGAGCAAACTCGCACCCGGGCGATTTCGCTTCCGTGCAATGAGGATCGCGCCCTTGACTGTGTCGCAGACTCTTGGTTTTCGCTGGATTTGCAGACTGACCGACGGTGAACTCGCGAATTGTGCACGGGATGTACACACGTTGTGTCCTCAACCTGGCCGGTCCGATACGAGTGGGCTTGCCGTGGACCATGTATAGTTGCGCCAGCCTGCGGGGGTATGCCgccagtgccagtgccagtgccagtgccagtgccagtgccGGGCAGGGGTTGAGCTGGTTTCGGGTCAAGAGGCGCCGGGGATTGGGCGACAGCAGATGTCTGAGTGGTTTCATGGGAATCGGTTTAGGAAACGCCGTCTGTCCGTCATCTTTCCCCGCGTCCAGGGCACATCCACTTCTTTTCTCCGGCTATACATTGTCCATACATTCGCCAGGCAGGTTTGCCAGATGGATCGCATCGTCGGCTTCAAAGCCAGAAGCTGGACAACCTGAAGGGGTGACGGAAGCCGAGAAGAAACCCAGCCGGCTTCTTTCCGCGGACGGGAGACGGCTGCTCCAGCTGGCACACCCGGAGCGGGGGCGACTGACGGCCGCCTTGGGTTTCCTGTTGGTTTCCAGTACCGTCACAATGTCGGCGCCCTTCTTCCTGGGCAAGGTGATCGACACCATCTACACGAGCCCGGCGCAGGACCTGAGCACCTCTCTGGGCAGCCTATGTGCCATGATGGCCGGGGTGTTCCTCTGTGGGGCAGCGGCCAACGCTGCCCGGGTCTATCTCATGCAGATCTCGGGACAGCAGATTGTGCGCAATTTACGAGAATCCCTTTTTTCCTCAATTTTGAGGCAGGAGGTGGGCTTCTTTGACCGGACTCGCACCGGCGAGCTCATCAACCGCCTGTCCGCCGACACGGCCCTCATCGGCCACTCTATCACCGACAACCTCTCCGACGGCCTCCGCGCTGTAGCTCAGGCAACAGCTGGGGTTGGCATGATGTTTTATGTGTCTCCCAGCCTTGCTGCCTTTGTCCTGATGATCGTGCCCCCGCTTGCAGGCCTGGCAGTGGTCTACGGCAGATATTTGCGCTCGCTGTCCAAGCGAACTCAGGACTCGCTGGCTGAGGCCACACAGTTGGCCGAAGAGCGGATTAGCAATTTAAGAACGGTGCGAGCGTTCGGGAAAGAGTTAATTGAGGTGGAGAAATATGTGGAAAAGATCAACTACATCCTGCACCTGGCGAAGAAAGAGGCGGTGACGGGGCTGAGCGGCAACATGATCGTGCTCTCTGTGCTCTACAAGGGAGGCTTGCTGATGGGCAGCGAGCACATGACGGTGGGCGAGCTCTCCTCCTTCCTCATGTACGCCTTCTGGGTGGGGGTGAGCATCGCAGgtCTCAGCTCCTTCTACTCAGAGTTAATGAAGGGGTTTGGAGCTGGCGACCGGTTGTGGCAGCTGCTGGATCGAAAGCCCGAGTTTCCTCTGAATGAGGGTGCTGTGCTGAGGCCAGAAGAGCTGAAGGGGGCTTTGGATTTCCGCAACGTGACGTTCTCGTACCCCACCCGCAAAGATGCCCCTATTTTTCAAAACCTCAGCCTGTCCGTGCCGGCCGGCTCCGTCATGGCGGTCGTAGGCCCCAGTGGTTCGGGGAAGTCCACGTTGGTGTCTCTGCTGCTAAGACTCTACGACCCCGACTCTGGTATGATTACTGTCGATGGGCTCAACGTACAGGATCTGAATCCATTCTGGCTGCGGAGCAACATTGGGACTGTCAGTCAGGAGCCCGTGCTGTTTTCCTGCTCCATCGCAGAGAACATTGCATATGGCGCACAGGACCCCTCCCAGGTCTCGGCTCAGGACATCCACCGGGCCGCCCAAATCGCCAACGCAGACCGCTTCATCCAGGGCTTCCCCAGGGGCTATGACACGGTGGTGGGCGAGAAAGGCGTTCTTCTCTCAGGCGGTCAGAAGCAGAGGATTGCGATAGCTCGGGCTGTACTCAAGAATCCCAAGATACTTCTACTGGATGAAGCCACCAGCGCTCTGGATGCAGAGAATGAGTTCCTGGTCCAGGAAGCCCTGGAGCGGCTGATGGAGGACCGCACTGTCCTCATCATCGCCCACCGGCTCTCCACCATTCAGAACGCGGACGCTGTGGCCGTGCTGGACCAGTGCCGCGTGGTGGAGTGTGGGCGGCACGAGGAGCTGCTGGGGAACGCAGAGGGGCTCTTCAGGAAGCTGGTGGAGAAGCAGTCTTTTCTGCAGAACAACCACAAACACGTGGTGTGCGAGTAATTTTTCAAACACTGCACTGACGATTTTAAGGTTTTATGGTTCACGACGGACGATTGACGTACATTCCTGTCCACGTGCCGGTGATGGAAATGCAATTGTGATTTTACCTGTGACAGCAAGTACACTGAGAAAGTGTACTGTGAGAATGGCGTGATCGTAAAAGACCGcagattgaataaaaaaatcggaacaaaaaaaatcccaccCTACACTTAAAAGTAAAGAACACACAGGCTTCATTTTTCAACAGATTGATTTCAAAGTGCACCACAAAGATGTTAGAAACATCCCACAACCCACAATCACAGACATGCACCTCTGGGATGTGACGTGGTCACTGTCTGGAGTCCTCCCTTTACTAGAACACAAACCGCTCCAAAGATGTgtgtcttttattattgttttgttgttttcggttttgtttttacaaaattagGTGCAAAATGTTACTTTATGTGAAGgtactgtattcatttttagaCAATGAAGGCATATACTACAGGTCTTGCAACTATTAATGACCCTTCCTATGAAACACTCAATCATCAGATTAACTAAATTAATGTCCAAATATGAATTTCAGATTGTATTTCCACATTAAAAGGAAGCAAAATGCAGAGCACTCTTATTTTGCATATGTAGCCTCGGACAGAAGTAAAATATTGATAGAAATCAGTGGAAGCATTATTGGGGATATGTATGCCTATGAATGCAGATGTTTCTTCAGTTCAATAATGATCTAATGcaagaaataaacatatactTGTCAGAGTGAGCACAAAATTGGGTTAGCAGGGTCGAAAGTTGGCTTGAAACGACTGCCCACGACTGTTCCAACAAGATAAGATAATGGTTTTAATTCCTAATCGCACAACCGGACATAATGATTCAAGATCTGTTGACTTATATCCATAGAGTTCCCCATtttcaaaaaagaaatactCTTGGCCAAGGCTGAATATGTATGTAGAAACCGAAGATAAATTGGATTGCTAGATTTGATGTGCCTTGTTAAATTCAGAGAAGAGAgaatataaagtatataaagagtatttctttaaaataatgtgtttacagCTGCACTTTATGTGAAAGGGGTAATTAAGTATatgtttcatgtgtttttttaaattgcattttaccAATAGTTTAATGTTACAATATCAGGTTTTATATGAAGTGCCACAAAATACTGCTTTGTCTGGAGAAATATAGTTTAATCCCTACAGAtgaactgtattttgtattaaactgtATACTCTGTATGCTGTCAAGCATTCTGTATAGAGTGAATGTGTCAGACTTGATCATCCACCGTCTTTGTACTACTGATTTGTTCCTACTAAATACATGGAAGTGTTggattaattaatgaatgtcttGTGTGATTCTCAAATGTTGTCTGTGGACTCCTGTTCTTTCCCATCCAGAAATGAGCCCAATAATAGTCCTGAATTATGTGTTTCAGAGAGGTCTCCCg

Function

GO: NA

KEGG:

id description
K05657 ABCB10; ATP-binding cassette, subfamily B (MDR/TAP), member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199387 lncRNA upstream 234075 6509294 ~ 6509630 (+) True G158364
TU199361 lncRNA upstream 321470 6422000 ~ 6422235 (+) True G158342
TU199355 lncRNA upstream 333148 6409021 ~ 6410557 (+) True G158337
TU199346 lncRNA upstream 345517 6396920 ~ 6398188 (+) True G158332
TU199234 lncRNA upstream 851459 5892046 ~ 5892246 (+) True G158230
TU199470 lncRNA downstream 34511 6787404 ~ 6788972 (+) True G158435
TU199603 lncRNA downstream 275294 7028187 ~ 7036066 (+) True G158539
TU199613 lncRNA downstream 302955 7055848 ~ 7056061 (+) True G158548
TU199625 lncRNA downstream 405357 7158250 ~ 7160609 (+) True G158555
TU199643 lncRNA downstream 416640 7169533 ~ 7169767 (+) True G158571
AMCG00001515 mRNA upstream 1765 6736097 ~ 6741940 (+) True AMCG00001515
AMCG00001507 mRNA upstream 152415 6563808 ~ 6591290 (+) True AMCG00001507
AMCG00001512 mRNA upstream 197781 6541673 ~ 6545924 (+) True AMCG00001512
AMCG00001509 mRNA upstream 348441 6395004 ~ 6395264 (+) False AMCG00001509
AMCG00001511 mRNA upstream 360497 6381967 ~ 6383208 (+) True AMCG00001511
AMCG00001518 mRNA downstream 838 6753731 ~ 6770900 (+) True AMCG00001518
AMCG00001519 mRNA downstream 19603 6772496 ~ 6776686 (+) True AMCG00001519
AMCG00001516 mRNA downstream 26769 6779662 ~ 6787020 (+) True AMCG00001516
AMCG00001522 mRNA downstream 108298 6861191 ~ 6863384 (+) True AMCG00001522
AMCG00001528 mRNA downstream 118871 6871764 ~ 6874095 (+) True AMCG00001528
TU199345 other upstream 347745 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 842707 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 872555 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 1121029 5597257 ~ 5622676 (+) True AMCG00001486
TU199079 other upstream 1360641 5381690 ~ 5383064 (+) True AMCG00001480
TU199525 other downstream 121875 6874768 ~ 6876578 (+) True G158478
TU199601 other downstream 270495 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 918421 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 918421 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 983622 7736515 ~ 7737890 (+) True G158672

Expression Profile