RNA id: AMCG00001532


Basic Information

Item Value
RNA id AMCG00001532
length 1539
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00001532
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7011905 ~ 7015337 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGTGTTATACGGTAGCCACTGTACTCATTGCGCATGCGTTAGGTAGCCAACACAACATGGCAGCACCCTGGTCGaaaattgcatttctcttttaCTTTCGGAGCATTTTCTTAACATAGACCGACTGGAACAGCCCAGCAAATTAAGtttcattaaattaagtaaGTTTTATGCAGATCTGCAAGGACGATGTCGCTCCGCAGTGTGACACTCCTGTGCAGGACAGTGAGCCGCACAGGGAAAGTGCACTGCTGGACACCATACAGAGACATGGCCAGGACACTTCCTCGCCGGTGCTGCAGTGCTAGAGCCACTCTACGTGGAGAAAGGACGTTTCAAAGGACACTGGGTCACCTCCAAGGAGGAAGAGCCCTACACCTTTCCTCACCTGTCCTGAGTACCAGCCTGCTGTCAGCCGAGGAACTGTTCACAAAGAAGTCGCTGCAGGATTACCTGGGAAGACTGGAGGCCCAATACAGGGACTCTCTGAAAAGCAGCCACACCAATAAAGGACGCATGGATGGGGTGGAGCACCTGAAAGAGTCCCGGAGGAGAATGACCAGTCTGGCAACATTAATAGCTGATGTTGAAAAGCTGAGATTGAAAGAGAATGAGATGAAAGACACTGAAGTGTTGTTGAAAGatGATGATGCTGACATCAGGGAACTTGCTGAGAGTGAACGAAGTGCCTGCATGGAGACAATACGAGACCTGAAGCAAAAGATTCTGTCACAGTTGGTTCACGAAGAAGAAGTGGACGAAAGCGACCTTGTCTTGGAGCTGACGGCCGGAGTTGGGGGACAGGAGGCTATGCTGTTCACGGCCGAGATATTTGACATGTACCAGAACTATGCCGCATTCCAGGGCTGGGGATTCGAAACACTGGAGTACTTTCCAAGCGAAATAGGTGGATTACGACACGCGACAGCCAGTGTTAGTGGCACTCATTGCTATAAGCGTCTGAAATTCGAGGGAGGGGTGCATCGTGTGCAGAGAGTGCCCAAAACTGAAAAGCAAGGACGGACTCACACCAGCACGATGACGGTAGCGGTTCTGCCCCAGCCAACAGAAATCAACTTCACGATTAATGCGAAGGACTTGCGGATTGAAACGAAGAGGGCCAGTGGAGCAGGAGGTCAACATGTCAACACGACAGACAGTGCGGAGAGATCTCAACTGAAGAACAAGGAAAAGGCAATGCAAGTATTGCGGGCTAAACTCTACAGTATGAAGCTTGAGGAAGCAACCAGCAAACGCTACAATGCACGCAAAATTCAGATTGGAACCAAAGGAAGATCGGAGAAGATCAGAACATACAATTTTCCCCAGGACAGGGTCACTGACCATCGGATTGGGAAATCTCTGTATGACATCAGGGGGTTCATATTGGGAGAAGGACTACTTGACGAAATGATTCAGACATTGCAAGAATTCTCGGAGCAGGAATCTCTGCTAGATATTCTGGAGGAAAACCAGCTGACAGAGCTCTAATTTTGAATGTGCtgcaaaataaagctttttggaaataaaataaagaa

Function

GO:

id name namespace
GO:0003747 translation release factor activity molecular_function

KEGG:

id description
K02835 prfA, MTRF1, MRF1; peptide chain release factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199470 lncRNA upstream 222933 6787404 ~ 6788972 (+) True G158435
TU199387 lncRNA upstream 502275 6509294 ~ 6509630 (+) True G158364
TU199361 lncRNA upstream 589670 6422000 ~ 6422235 (+) True G158342
TU199355 lncRNA upstream 601348 6409021 ~ 6410557 (+) True G158337
TU199346 lncRNA upstream 613717 6396920 ~ 6398188 (+) True G158332
TU199603 lncRNA downstream 12850 7028187 ~ 7036066 (+) True G158539
TU199613 lncRNA downstream 40511 7055848 ~ 7056061 (+) True G158548
TU199625 lncRNA downstream 142913 7158250 ~ 7160609 (+) True G158555
TU199643 lncRNA downstream 154196 7169533 ~ 7169767 (+) True G158571
TU199652 lncRNA downstream 296807 7312144 ~ 7313758 (+) True G158580
AMCG00001531 mRNA upstream 1190 7000441 ~ 7010715 (+) True AMCG00001531
AMCG00001529 mRNA upstream 68759 6937347 ~ 6943146 (+) True AMCG00001529
AMCG00001528 mRNA upstream 137810 6871764 ~ 6874095 (+) True AMCG00001528
AMCG00001522 mRNA upstream 148521 6861191 ~ 6863384 (+) True AMCG00001522
AMCG00001516 mRNA upstream 224885 6779662 ~ 6787020 (+) True AMCG00001516
AMCG00001541 mRNA downstream 1592 7016929 ~ 7020818 (+) True AMCG00001541
AMCG00001542 mRNA downstream 97315 7112652 ~ 7133015 (+) True AMCG00001542
AMCG00001536 mRNA downstream 255081 7270418 ~ 7296604 (+) True AMCG00001536
AMCG00001535 mRNA downstream 284853 7300190 ~ 7305321 (+) True AMCG00001535
AMCG00001539 mRNA downstream 376736 7392073 ~ 7410053 (+) True AMCG00001539
TU199525 other upstream 135327 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 615945 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 1110907 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 1140755 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 1389229 5597257 ~ 5622676 (+) True AMCG00001486
TU199601 other downstream 8051 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 655977 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 655977 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 721178 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 731344 7746681 ~ 7746980 (+) True G158676

Expression Profile