RNA id: TU199730


Basic Information

Item Value
RNA id TU199730
length 2288
RNA type TUCP
GC content 0.45
exon number 6
gene id AMCG00001550
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7671314 ~ 7679783 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGATTTCTCaatagcttttatttattttttttaaatcttaagtCCAGTTAGGCTCAGGCAGGAGAGTTTCCATTCTCTATAAGCAGTTATGTTGTGCAATTAgttattatttaagtaattaatgCAATCTGGATGTTCAGAAACACCAGGGTTTagtaaacaaagcaaattataAGAAACCTACAATACCTCAGTGCTGTATTAGCTGTACATTGAcaaactgtttttgtgtttcatagGAAAACGAAAAATAACACGGGACACAAATATTCTAAATAAgaggtttatttaaaatcactgtTAAATTGCTTTGCTTGAACTACACATCTGttagtccccccccccccccccccccccccccccccaacacacacaaacaaaaaaacaggaataaaaaaaactgaatataaGATTTCTAATAATATTTCTGTAATACTGGAAGAGATTACACTTTATTAATACtgattatgtttgtatttaactaAACATTGGCTGTTATCATAGTGGGGATGCAGCTCAATGCAGTGTATTGTAATGCTGTCATCTCTGCTTTGTAGATCTAATCTACTTGCAGTTATTTATCAGCCTGGTTTCAGGAATCCAAGGACGGGACCACACTTCAAAGGTGCATGTGCGGGCCTGCGAAtgagaagaaagacaaagacgATCAGGGCAAGCAGATTTTCAGTGTGTTCCCAAGACTGGGAGATTTCCATCTGTGATGTCTGAAAGTACAATGAATACAACAGTTTTCCAAAAGCCTGGATACCGAGCAGATCAGGAGTCTGTTGTAGTCAAGATTTTGTCGTTGTCCTTCATGGGCACCACAGTACTGTAAATCTAGAAACAGACAATACTAATATTCCACTGAGTTTGCAACTGGCTGAACATATGCAGTTCATTAAAGTAACTGTGCAGGAAACTTATGCACTCTACATGTAATGAAAGTGAAACTGATATAATCATAAATGTCCACAGAGCAGCAAAATCATTACACGCGCTTGACATTGCATTACCTTAGCCACCTCAGCATCCCCGTGCACGGCACACAGCTCCAAAGCTTCAACTCCTCCCTTTCTGCAAGATGTGCGGACCATCTCCACTGTGAAGATGTACTTAATCCCTGCAACAACCTGTCTTGACATCAATGATTTTCGACTCCTTGCTGATGTACGCGTCGTTGCTGGCCTTGTTATACTCGGACACTGCGAATCTCAGCGCATCTTTGACCCCGGCGTCGGACAGGTCTGCTTGCATGGGCCCTCCGACCAGCCTCTCAGCCGAACCGACAGCCGCTACAACACACGTCGCAGCGAGCAGCAGAAACCCGGTCTTCCAGGACACAGCCATTTTCACACGCACAGCTTCTCTCCGCTCGAAACGAAGTAAACAACCAGCCCGGACCGCGGCGGATTACTGTGATGACGTCACCGCGGGGCTGCCCACCCCGCAGACCATGTGACGCTGCGCCTGGCTTTAAAGATGCCCAGTGTGCTGGAGTCAGCATCAGGGATTCACCTTAAACACACATAACAAGGGAATCCGCAAGCCACCTCATGGAAGGGTCCTCGTTGGGATGAGTTAATGTCAGGTGACCAGGAAGCTGACAGGAGCAGGTCTGTGCAGGCACACTTTGTTGTtgccgttttttgtttttttgctgtgtttgcGAGACTGCAGGATGTGCTGCAGTGAAGTACAGCAATAGCTGGCAAGAATGCCAAAACAGAGATGCAGCATTTCGGTAAGGAACACCCGAGGTAGAGAGGTGAACCCTAGGAGACTATCAAGCCAGGAAAACCATCTGCTGAACCTGGCATTGAAGACAGAACAACTGGGAGCCAAATCCTATCATGCCTCCCTCTCGGGCGAAGTACACCATGACCGTGGAAGTCGGGAAAACTGTGTGTAAGAACGTACGCGGTGTGAACTTGGCTGACTGCGCCCTGGAAACAGGGGCCAATGCTCAAacaaTGACTTGTAACTTTGTTGTGCTGGCTGTCCCAAACACCGACTTTTCCAGCTACCTTTTGAAGGACCAGTGCTTCTAATGAAGGCCTAGCAGCACAACTGGGAGattaggagagagagagaggattggTTCCACCCAGTTTGTAAATCTGAGCAGCACACATGAGACAATAACCCTTCATTTCAGTGTCACGTCAGACCTACTCTAACAATTGGCAGCAAATACATTGTCATTAAACTCCTTGTTTTAATAGGCACTGTATCAACCCCCACTGTACCTGTTGACgctgaaataaattacatagaATGTGttcgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199723 lncRNA upstream 6742 7661584 ~ 7664572 (+) True G158631
TU199706 lncRNA upstream 96182 7574914 ~ 7575132 (+) True G158621
TU199652 lncRNA upstream 357556 7312144 ~ 7313758 (+) True G158580
TU199643 lncRNA upstream 501547 7169533 ~ 7169767 (+) True G158571
TU199625 lncRNA upstream 510705 7158250 ~ 7160609 (+) True G158555
TU199773 lncRNA downstream 47767 7727550 ~ 7728815 (+) True G158667
TU199774 lncRNA downstream 49770 7729553 ~ 7731701 (+) True G158668
TU199778 lncRNA downstream 55493 7735276 ~ 7735610 (+) True G158671
TU199780 lncRNA downstream 60843 7740626 ~ 7741056 (+) True G158673
TU199782 lncRNA downstream 63775 7743558 ~ 7744033 (+) True G158675
AMCG00001548 mRNA upstream 121321 7530946 ~ 7549993 (+) True AMCG00001548
AMCG00001540 mRNA upstream 218513 7421810 ~ 7452801 (+) True AMCG00001540
AMCG00001539 mRNA upstream 261261 7392073 ~ 7410053 (+) True AMCG00001539
AMCG00001535 mRNA upstream 365993 7300190 ~ 7305321 (+) True AMCG00001535
AMCG00001536 mRNA upstream 374710 7270418 ~ 7296604 (+) True AMCG00001536
AMCG00001559 mRNA downstream 6601 7686384 ~ 7688398 (+) True AMCG00001559
AMCG00001558 mRNA downstream 16505 7696288 ~ 7710825 (+) True AMCG00001558
AMCG00001560 mRNA downstream 39011 7718794 ~ 7720111 (+) True AMCG00001560
AMCG00001556 mRNA downstream 95059 7774842 ~ 7792880 (+) True AMCG00001556
AMCG00001571 mRNA downstream 174361 7854144 ~ 7859415 (+) True AMCG00001571
TU199601 other upstream 643173 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 794736 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 1275354 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 1770316 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 1800164 5870719 ~ 5871150 (+) False AMCG00001489
TU199779 other downstream 56732 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 66898 7746681 ~ 7746980 (+) True G158676
TU199853 other downstream 253373 7933156 ~ 7933555 (+) True G158725
TU199983 other downstream 479363 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 2233525 9913308 ~ 9914664 (+) True G159174

Expression Profile