RNA id: AMCG00001558


Basic Information

Item Value
RNA id AMCG00001558
length 5031
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00001558
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7696288 ~ 7710825 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACGTATATCCGCATCAGTGTGAAGGGGCAcggagttattattattgtttttgttcgAAGTGAAGGGgatagggatttttttttcttttctaattttctttagttttcctCCCCCCTTCAGCCCTGTCCGATGCGTTAGGACGAATGCCCcggttttggaaaacaaaagggCGACGATAATTTGACGACGGGGGGACAGGTTCCGATCAAATAATGGATCCGCGGGTAGCAGAGCTGTTTGGTAGCGGTTCCGTGTTGAAGTCGAGCTGCCAGGGACTCGGCTCCGGTTCGGGCGGCGGGTTCGGGATGATGATGTCGAAAAAATGCTCTAAAAACGGGAAGAAAGTGAAGAACCGGGCGACCAGAAATACGAAGCCCAACAATAACCCGCCTTACCTGCCTCCAGAGGCCGAAGAAGGAAACATCGAGTACAAGCTGAAGTTGGTGAACCCCACACAGTATCGCTTCGAGCACCTGGTGACACAGATGAAATGGAGGCTACAGGAGGGTCGGGGAGAGGCGGTCTATCAGATCGGAGTGGAGGACAACGGGCTACTGGTGGGGCTGTCTGAGGAGGATATGAGGGCTTCCCTGAAGACTCTGCGCAGGATGGCCGAGAAgGTTGGCGCTGACATCACTAtactaagagagagagaggtggattATGATTCTGACATCCCCAGGAAGATTGCTGAGGTGTTAGTAAGGAAGGTGCCAGATGACCAACAGTTCTTGGACCTGCGTGTGGCCGTTCTTGGCAATGTAGACTCGGGGAAGTCCACTCTGCTCGGGGTGCTGACCCAAGGCGAGCTGGACAACGGGCGAGGACGGGCCAGACTCAACCTCTTCAGACATCTCCACGAGATCCAGTCGGGCAGGACTTCCAGCATCAGCTTCGAAATCCTGGGCTTTAACAGCAAGGGCGAGGTGGTGAACTACAGCGAATCGCGGACAGCGGAGGAGATCTGTGAGAGTGCCTCCAAAATGATCACCTTCATTGACCTGGCTGGGCACCACAAGTACCTGAAGACCACCATCTTCGGCCTGACCAGCTACTGCCCAGATTTTGCCATGCTGGTGGTTGGGGCCAACACAGGCATAGCGGGCACGACACGGGAGCACCTGGGCCTGGCCATGGCTCTGAAGGTGCCCATCTTCATCGTGGTGAGCAAGGTGGACCTGTGCACCAAGGGCACCATTGATCGGACAGTGCGGCAGCTGGAACGCATCCTCAAACAGCCCGGTTGCAACAAGATCCCCATGGTGGTGTCCAGCGCCGATGATGCCGTCACTGCCGCCCAGCAGTTCGCACAGTCCCCAAGCATCACCCCGATCTTCACCCTGTCCAGTGTGTCAGGGGAGAGTCTCGACCTCCTCAAGGTCTTCTTCAACATCCTGCCGCCCCTCAGCAACAGCAAGGAGCAGGAGGAGCTCATGCAGCAACTCACAGAGTTTCAGGTTGACGAAATCTACACAGTGCCGGACGTGGGAACGGTGGTCGGAGGAACCCTGTACAGtGGGATCTGCCGGGAGGGCGAGCGCCTAGTGGTGGGCCCCACCGATGAGGGCAATTTCCTGGGGCTGAAGGTGTGCAGCATCCAGAGGAACCGCTCAGCCTGTAGGGTGCTGAGGGCTGGCCAGGCCGCCACGCTGGCCCTCGGCAACTTCGACCGCTCGCTGCTCCGAAAGGGAATGGTGATGGTGAGCCCGGAGATGAACCCCACTATCTGCTGGTTGTTCGAGGCCGAGATCGTGCTGCTCTTCCATGCCAAGACCTTCCGGAAAGGCTTCCAGGTCACGGTGCACGTGGGCAACGTCCGGCAGACTGCTACTGTGGAGTGTCTGCATGGCAAGgatGAGCTGCGCACTGGCGAGAAGGCCGTGGTGCGTTTCAAATTCATCAAACACCCAGAGTACCTGAAGGTGGGGGCCAAACTGCTCTTCAGGGAGGGGGTGACCAAAGGCATTGGGCACGTCACTTACCTGCAGCCTGCCTCCCTGTACCAGCATCATACataggagagagggggagagagcaatggagggggagagagagagagacagacagaggaagaCCTGGATTGCTCTCCCCGGGAACCTCAGCACCAGCCCATCCGCACAGAGGGAGCTGCTCTGATCAGTCCCAGCATCCTTTGCCCCACTGCCATCGTGACGTCCCCATGCTTTGATCCTGACCATTGCTCAGGAGCTTGCCTGCCCCATTGTCCCACAGCCTTTTTTAACTGTTTGTAGTCTGAGCTAATGCTTTTATATCAACAGGCTTTTGctcacattctctctctttttgtgtttgtttggtatCATTTTGAGGAGCATTAACTGAGGGAGACTTGTTGTAACTCTCACAATTCTACAGAGCTCAGCCCTGATAGTCCTACACTGAACCAGCATGGAATACCAACTGGTTCCACTATTAATAACCGGCTCCAAGAGCGCATAACAGAAAGCTCGATTGGTTGCCTCTAGAATTTTGCATTGGCAGAACAAAAGCAGCCTTCTGACGATCGATAAACCGCTGACAAGTCAGAAGGAGTGCGATTATGAGAGGCAAAATATTTGGAGTGCGCTGAGCAGATTTAAATATagccacaaataaataaaaatcatacgAAAAAACACAGCAAGTGATTACTTAAAAGcctcctgctgtgaaatgtttaCAATACCAAAAACCAAATGGACGCCGTCAGAGATGTTCAGAGTGGCCACCAGGATGAGGCCGCAGGACCCAACCGCAGCATGATTTGGTATTTGCCTACTTTTTGCAAGTGCTTCCGTTGCCCAGGACACGAATGGGTTTTTTTGATCTCCCGGAAGCCGCGTCCTTTTCGAAATCCAGCCCCCATCACCCTGCACAGGTCCGCGGCGTTAAATTAAATTGGTGGGATGAAGAAATCCACTTTATGGCCTAATCTCGGATAGCCTTTAAGAAACACTTGCCTTTTAGACTCGGTTTTCTGAATCAGGTTCTGTTTTTGGTCTGCTGGTGGCACCATAAGTGCAGGATGACTCCCGGACTAGCAGAACAAAGTTGTTTCTGACGCAGTATGCCCctttaacatggttttaaagaAGAAGGTAGTGTCTGAGGCCATGTACAGTTGACTTTATAGAGATTGAAGGTAGTGTTCACAAAGTGTATATTAGAATTCCACTAGTTGATCTGTGGATTTCAAAGTTTCTCTGTTTCCAGGCCATTTGAATTTTTTCATGACCAAGTTAGTGTTTTGGGACGGCTTTGAGAAATGCAGTCTTTTGGATTAGCTTTCTGCAGTCAGAGCCTTTTGTTTCTCTGCTGCGGCAGGAAAGTACTGTTCTTTCGCTACAAGATTTGTTTCCGATTCAGTCCTAAATAGAggaagatttttattttttatttttttggccaaTTTAGCCCACTATGTATTTGAAAACTATCATGAGATTTTAAATCTAGTGTTTAGCCGAGGGTAGTCAAAACCGTACAGAACAAACCCCATTAAACATTGCACTGCTTAAGACGGcaaaaaatgaatgattttaAGCACTTGCTTTAAAAATTGgtattttaaagcagaataaacCGGTGTCTGAAACACTGATGCTTTCAGATCATGCTGTACAGGACGGCTATAACCAGCCCTGCTGTGTTAATAAATACTACACATCTTTATGACACGTCCCCCATTGCATGAACACACAGGGTCAGAAGTTAGATTAGGTCTTCTCTCAGCTCCTTCCCATCAGCCACTGGCAACATTGTAGCattgacattttatattatttatttgtcgattttaacctttatttaaccaaGAAGGGCCTAGACACACATTCTAGATCAAATTGGATTGTTTCTtgctgtatattgttttatataagccctccaaaatacattgttttagaaaataaatccatCCTCACAGTGTTCCTCACAGCAGCTTGTCATCAACCACCTAAAACCACAGACACGACAACCCTTTTGTAATACAAAACTCCCCTACAGCGTGACTGTAGTTTCTTATCCCTCAATTGTACATGAgtctttgcatttccttttagaCAGTGATACCACAAGTTTGTTATTGATGGGGTTGAAGTTACAGTGCCTACAAAAGAAGGAATATTCGATTATTTCTTCTTGTATAGTCCTAATGTGTTGGAAAACacttgaatttttattttatttttctcatgtggTGCTACTCGTTGAAAGGACGTTTTAGGAAGACATGTAGATAATGCACACGTGGAATCGGTTCACTGTCGACTGTTCTGTTTAAGGTTGCTGCTGTTGGCAGCCGTGTCAGCTGTGTGTCCAGACTCTCCCTGCATGTTGAACAGAGCAGTACTGAGGAGTGTGTGTTGCCTCGCTGAACAAacgcagcaaaaaaaaatatttataatagttTGTGTCGTTAATTGTTATTCTTACATGTGGTTCTTGTGCAATTGCAAACgacaaaatatatagaatgtaTGTGAaccaaaatatatgtaaatatatatatttttaagagaaATGTTACTCAAATGTTCACATTAACCTTTTGcaaaaaatacttgttttctgTTGCATCCATCACAATTTTTTTACAACTTTGAAGTAGTGTTTCGATTTCCATACAGATTCCAAATGCCTTTTGACAGTCATCTGCTGTTTGATTTATTCAGATTCAGCACTGATCTCCTATGCAGGCTGGGTGTCCCACATACCCTACACAATGGACacgaaaaaggaaagaaaccgTGTCATTTGTTTAATCCCAACCCGAGGTAAAGTCTTTTGaagttttattgtaatattttaatcttCCTTTCGTGTGAAATTTCTGCGATTTATGTACAAATCCAGTTTGTATATAATggtgtacataaataaaagttttattaCACAACGAGTTTAATTTCATTAGTGCGGTTTTCTTTGCAGAACGTGAAACTGAATAAATCTTTCTTGTGACATCCATGAACAATGCACCTTGGTGTAGAATAATCACATACATTAGGTCACCATCGCCAGAAAAAG

Function

GO: NA

KEGG:

id description
K24888 GTPBP2; GTP-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199723 lncRNA upstream 31716 7661584 ~ 7664572 (+) True G158631
TU199706 lncRNA upstream 121156 7574914 ~ 7575132 (+) True G158621
TU199652 lncRNA upstream 382530 7312144 ~ 7313758 (+) True G158580
TU199643 lncRNA upstream 526521 7169533 ~ 7169767 (+) True G158571
TU199625 lncRNA upstream 535679 7158250 ~ 7160609 (+) True G158555
TU199773 lncRNA downstream 16725 7727550 ~ 7728815 (+) True G158667
TU199774 lncRNA downstream 18728 7729553 ~ 7731701 (+) True G158668
TU199778 lncRNA downstream 24451 7735276 ~ 7735610 (+) True G158671
TU199780 lncRNA downstream 29801 7740626 ~ 7741056 (+) True G158673
TU199782 lncRNA downstream 32733 7743558 ~ 7744033 (+) True G158675
AMCG00001559 mRNA upstream 7890 7686384 ~ 7688398 (+) True AMCG00001559
AMCG00001550 mRNA upstream 16511 7676085 ~ 7679777 (+) False AMCG00001550
AMCG00001548 mRNA upstream 146295 7530946 ~ 7549993 (+) True AMCG00001548
AMCG00001540 mRNA upstream 243487 7421810 ~ 7452801 (+) True AMCG00001540
AMCG00001539 mRNA upstream 286235 7392073 ~ 7410053 (+) True AMCG00001539
AMCG00001560 mRNA downstream 7969 7718794 ~ 7720111 (+) True AMCG00001560
AMCG00001556 mRNA downstream 64017 7774842 ~ 7792880 (+) True AMCG00001556
AMCG00001571 mRNA downstream 143319 7854144 ~ 7859415 (+) True AMCG00001571
AMCG00001573 mRNA downstream 160328 7871153 ~ 7881358 (+) True AMCG00001573
AMCG00001572 mRNA downstream 171891 7882716 ~ 7895972 (+) True AMCG00001572
TU199730 other upstream 16505 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other upstream 16505 7671314 ~ 7679783 (+) False AMCG00001550
TU199601 other upstream 668147 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 819710 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 1300328 6394103 ~ 6395960 (+) True AMCG00001509
TU199779 other downstream 25690 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 35856 7746681 ~ 7746980 (+) True G158676
TU199853 other downstream 222331 7933156 ~ 7933555 (+) True G158725
TU199983 other downstream 448321 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 2202483 9913308 ~ 9914664 (+) True G159174

Expression Profile