RNA id: AMCG00001560


Basic Information

Item Value
RNA id AMCG00001560
length 591
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00001560
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7718794 ~ 7720111 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTTAGCTCAAATATACAACTTTCCCCCCACAACACCACAGGAGAAGCCGGTCCCGGTGGTGGAGTATGGGAAGGATCGTGTGGTGGCGCTGGTGGACATGGACTGTTTCTTCGTCCAGGTGGAGCAGAGACTGAACCCGGAGCTGAAGAACAAGCCCTGTGCGGTGGCTCTGTACCAAAGCTGGAAGGGAGGCGGGATTATAGCTGTGAGTTATGAGGCCCGAGCATATGGAGTCACCAGGAGCATGTGCGCAGAAGATGCCAAGAAGCTGTGTCCCGACCTGGAGGTGGTCCTGGTCCGAGAGTATTATGGCAAAGCGAACCTGAACCGTTACCGGGATGCCAGCGTGGAGGTGATTGAGGTGATGTCTCGGTTCGCTGTGATCGAGAGGGCCAGTATCGACGAGGCCTATATGGACCTGACCAGCTCTGTGCAGAAGAGGCTGAGAGCAATGGCGGGGCGGCCGATGGAGCCGGGCCTGCTGAAGACCACCCACGTTCAGGGCTTCCCACAGCGGGTGCAGGCGGAGGAGGCTGTGCTGGATAAAGGTCTGCTTCAAATCAGAGACGAACCCGCAAAGCGCTAA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K03509 POLH; DNA polymerase eta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199723 lncRNA upstream 54222 7661584 ~ 7664572 (+) True G158631
TU199706 lncRNA upstream 143662 7574914 ~ 7575132 (+) True G158621
TU199652 lncRNA upstream 405036 7312144 ~ 7313758 (+) True G158580
TU199643 lncRNA upstream 549027 7169533 ~ 7169767 (+) True G158571
TU199625 lncRNA upstream 558185 7158250 ~ 7160609 (+) True G158555
TU199773 lncRNA downstream 7439 7727550 ~ 7728815 (+) True G158667
TU199774 lncRNA downstream 9442 7729553 ~ 7731701 (+) True G158668
TU199778 lncRNA downstream 15165 7735276 ~ 7735610 (+) True G158671
TU199780 lncRNA downstream 20515 7740626 ~ 7741056 (+) True G158673
TU199782 lncRNA downstream 23447 7743558 ~ 7744033 (+) True G158675
AMCG00001558 mRNA upstream 7969 7696288 ~ 7710825 (+) True AMCG00001558
AMCG00001559 mRNA upstream 30396 7686384 ~ 7688398 (+) True AMCG00001559
AMCG00001550 mRNA upstream 39017 7676085 ~ 7679777 (+) False AMCG00001550
AMCG00001548 mRNA upstream 168801 7530946 ~ 7549993 (+) True AMCG00001548
AMCG00001540 mRNA upstream 265993 7421810 ~ 7452801 (+) True AMCG00001540
AMCG00001556 mRNA downstream 54731 7774842 ~ 7792880 (+) True AMCG00001556
AMCG00001571 mRNA downstream 134033 7854144 ~ 7859415 (+) True AMCG00001571
AMCG00001573 mRNA downstream 151042 7871153 ~ 7881358 (+) True AMCG00001573
AMCG00001572 mRNA downstream 162605 7882716 ~ 7895972 (+) True AMCG00001572
AMCG00001574 mRNA downstream 189087 7909198 ~ 7917326 (+) True AMCG00001574
TU199730 other upstream 39011 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other upstream 39011 7671314 ~ 7679783 (+) False AMCG00001550
TU199601 other upstream 690653 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 842216 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 1322834 6394103 ~ 6395960 (+) True AMCG00001509
TU199779 other downstream 16404 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 26570 7746681 ~ 7746980 (+) True G158676
TU199853 other downstream 213045 7933156 ~ 7933555 (+) True G158725
TU199983 other downstream 439035 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 2193197 9913308 ~ 9914664 (+) True G159174

Expression Profile