RNA id: AMCG00001573


Basic Information

Item Value
RNA id AMCG00001573
length 3077
RNA type mRNA
GC content 0.48
exon number 28
gene id AMCG00001573
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7871153 ~ 7881358 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGACGTTGCCCCGCCCACTGCCCTACGTCAGAAAGTGTCATGTCAGCCTACAGTACCTGCAGCACTGGTTTAATCAGGCTGCTTTGCCATTCAGAGCTTTTCTCAACTCGCTACCCCACCATGAGACACTTGCTCGGCCTGGGGTCCCGAGTGGCTCGGACTCATGGCAGGGGCTGCCATCAGAGCATCTGGAAGAGCCACGGCGCCGTGGGGAAAGTCGGAGTGGATATAGGAGAAAGAAAACTCGAGATCTCCACAGGGAAGCTGGCCAGATTTGCTGATggctgtgctgtagtgcagCTTGGAGACACATCTGTGATGGTGACAGCTGTCAGTAAAACTAAGCCAACATCCTCACAGTTTATGCCACTAGTAGTGGATTACCGACAGAAAGCTGCAGCAGCCGGGAGAATCCCCACTAATTACCTGAGGAGGGAGCTGGGAACGACAGATAGTGAAATTCTCACCAGCAGACTGATCGatcGCTCCATCAGGCCGCTGTTTCCTGCTGGCTATTTCTATGACACACAGaTCCTGTGTAACCTGTTGGCCGTTGACGGGGTGAATGACCCTGATGTACTTGCCATTAATGGAGCTTCTGCGGCCCTTGCACTCTCGGACATCCCATGGAATGGACCCATTGGGGCAGTGCGTGTGGGTCTGGTTGACGGAGAGTTTCTGGTGAACCCGACCCGGATGGAGATGGCTTCCAGCACTTTAAACCTGGTGATCGCTGGAGCCCTGCACAGCCAAGTGGTCATGATGGAGGCTGCAGCGGAGAACGTGCTGCAGCAAGATTTCTGCCACGCCATCAAGTTGGGAGTGAAACATACCCAACAGATCATTCTCGCCATCCAGCAGATGATGAGGGAACAGAAAGTGTCCAAGCGCACCCCCGCCAAACTCTTTGCTGCCCCTGTTGAGATGGTGCAATATGCAAGACAGCTGGCCTCAGAAAAGATCTATGCAGTTTTCACAGACTTCACCCATGACAAAATTTCAAGAGATGAAGCTGTTAACAAAATCCGTCTGGACACGGAGGAGCAGATAAAAGAAAAATATCCCGAAGCCGACCCATACGAGGTGATGGAAGCCTTTAACACCGTTTCCAAGGAGACTTTCCGAAATTTAGTTCTGAATGAATACAGAAGGTGCGATGGAAGGGACTTGACGTCTCTGAGGAACATTTCCTGTGAGGTGGACATCTTAAAGCCCCTTCATGGATCTGCCCTGTTTCAAAGGGGACAAACTCAGGTTCTTTGCACAGTGACATTCGACTCTATAGAATCAAGTATTAAAACTGACCTGATCACTTCAGCTGTAagTGGAGTCAAAGACAAGAATTTCATGTTGCACTATGAGTTTCCCCCCTACGCCACCAATGAGATTGGCAAAATGGGTGGCATCAACAGGAGAGAGCTCGGCCATGGGGCCTTAGCGGAGAAGTCCTTGAAACCAATCATTCCCAAAGACTTCCCTTTCACGATAAGAGTCACGTCCGAAGTGTTGGAGTCCAATGGATCCTCTTCTATGGCCTCAGCCTGTGGTGGGAGCCTGGCTTTAATGGATGCAGGTGTGCCGATCTCGTCTGCTGTCGCTGGTGTCGCCATCGGCCTCATTTCAAAGCCAAACCCAGAGAAGCCCTCTGAAGTGGAGGATTACAGGATTCTCACTGACATTCTGGGAATAGAGGATTACAATGGAGATATGGATTTCAAAATGGCGGGAACAAACAAGGGAATTACAGCTTTACAGGCGGATATAAAGATTCCTGGATTGCCACTGAAAATTGTCATGGAAGCTATTCAACAAGCTACAGTGGCTAAGAGGGAGATATTGGCCATAATGAACAAGGCGATTGCAAAACCCAGGCTAAACAGGAAGGAGAATGGGCCCGTAGTAGAGAACGTCAGGGTTCCTATCTCGAAGCGAGCCAGATTCGTTGGGCCAGGGGGGTATAACCTCCGGAAACTACAAGCAGAAACAGGCGTTACAATCAGCCAAGTGGACGAGGAGACGTTCTCTGTGTTTGCGCCCACTCCCGCTGCCATGCATGAAGCCCAGGACTTCATCACTGACATCTGTAAAGACGATCAAGAGGAGCAGCTGGAGTTTGGGGCTGTGTACACAGCCACCATCACCGAAATCAGAGATATTGGAGTCATGGTCAAGTTATATCCTAATATGAGTGCTGTGCTACTCCACAATTCTCAGCTGGACCACAAGAGGatcaGACATCCGAGTGCTCTGGGACTTGATGTTGGCCAACAAATCCAGGTGAAGTACTTTGGGCGCGACCCCACAGACGGGAGGATGAGACTCTCCCGGAAAGTTCTGCAGTCACCTGCGGCAACTGTTGTGAAGACCCTGACTGACAAACACAGTATCGCCATGGGAGCGGGCGACTCTCAGGGCGCGAACTCCTCTTAACCCCTCTCGGTCTCGGAGCGTGGAGCGTTTTGTTGGTGCTTAAGGCCACACTTGAGCTACCCATTTCTTAATTACAGTCATCTGTAAGCTGCTAACATTTCACATGGTTTTTCCTTCATAAATACAGTGGTGCTCTGGTGCAGTATTGTTTATGAAGGTGTACAGAAAAGAACATAGCCACTTGGTGTACTAAGAGGTTCTCTACCCCAAACCTGATTTTAATCAATGTCGGATTTTTGGTCGTACCAATTTCACCCCTATGAGTTTTTCACTCCTGACCCATTCACACAAGAAACCTCTCTTGGAATGTGGCTATTTTATGGATCTTTATTGAGTGAGAGGAAAGCCATAAAGGCTATTAAGTCTCATTTTGATTTATGaagcaaaaacaattaaccttttctagttaatatattttttaaactttaattaagAAACGGAGCCAAGTTAGACAGTGGCATACACTTCCAGAGGCAAGTCAACATTACACAATGAAGAACAGCTTTGCAATGGCCTGtgtggataaaaaaataaactagttCTAGTTTCAAGCACCCTGTATAAAATTCTGTATCCTTTGATGTTTTTAGActcttgtatgtatgtatttaaaatgttttataaaataaatatggaaaatgaaA

Function

GO: NA

KEGG:

id description
K00962 pnp, PNPT1; polyribonucleotide nucleotidyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199784 lncRNA upstream 118383 7752402 ~ 7752770 (+) True G158677
TU199782 lncRNA upstream 127120 7743558 ~ 7744033 (+) True G158675
TU199780 lncRNA upstream 130097 7740626 ~ 7741056 (+) True G158673
TU199778 lncRNA upstream 135543 7735276 ~ 7735610 (+) True G158671
TU199774 lncRNA upstream 139452 7729553 ~ 7731701 (+) True G158668
TU199836 lncRNA downstream 18085 7899443 ~ 7901353 (+) True G158713
TU199854 lncRNA downstream 52300 7933658 ~ 7933858 (+) True G158726
TU199855 lncRNA downstream 52615 7933973 ~ 7934875 (+) True G158727
TU199856 lncRNA downstream 53716 7935074 ~ 7935289 (+) True G158728
TU199857 lncRNA downstream 54914 7936272 ~ 7936478 (+) True G158729
AMCG00001571 mRNA upstream 11738 7854144 ~ 7859415 (+) True AMCG00001571
AMCG00001556 mRNA upstream 78273 7774842 ~ 7792880 (+) True AMCG00001556
AMCG00001560 mRNA upstream 151042 7718794 ~ 7720111 (+) True AMCG00001560
AMCG00001558 mRNA upstream 160328 7696288 ~ 7710825 (+) True AMCG00001558
AMCG00001559 mRNA upstream 182755 7686384 ~ 7688398 (+) True AMCG00001559
AMCG00001572 mRNA downstream 1358 7882716 ~ 7895972 (+) True AMCG00001572
AMCG00001574 mRNA downstream 27840 7909198 ~ 7917326 (+) True AMCG00001574
AMCG00001577 mRNA downstream 41410 7922768 ~ 7923494 (+) True AMCG00001577
AMCG00001576 mRNA downstream 42168 7923526 ~ 7928887 (+) True AMCG00001576
AMCG00001575 mRNA downstream 58776 7940134 ~ 7962377 (+) True AMCG00001575
TU199783 other upstream 124173 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 133263 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 191370 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other upstream 191370 7671314 ~ 7679783 (+) False AMCG00001550
TU199601 other upstream 843012 7023388 ~ 7028141 (+) True G158537
TU199853 other downstream 51798 7933156 ~ 7933555 (+) True G158725
TU199983 other downstream 277788 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 2031950 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4448630 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 6388257 14269615 ~ 14270190 (+) True G160026

Expression Profile