RNA id: AMCG00001603


Basic Information

Item Value
RNA id AMCG00001603
length 3740
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00001603
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8748296 ~ 8758510 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACCCGTCTCGACCATCGCACGGTAGCCGAGTTATGCCAAACCAAGACCGGCGAACAGTGCGTTTCCAGCAGTAAAGCGAGAAACTGGCTTTTGGTTTTTGttctcccccccaaaaaaaacaatctctccGTTAGACtttaaagtttttcttttctttttctgttgttatctatttttaattattccacATCAGTCTAAAGACGATACATATTGACGCTTCGAGTCCCCCCTTTCTGATCCATACAGGaccctgtgtttgtttgtgtttttcgttactgtttttcttttcttttttgactttttttttccccgatAAGGTTTTAAGTGACCAAGATAGGCGGCTCGGGCACTAAGATGTCGAACCGAGTGGTGTGCAGAGAAGCAAGTCACGCCGGCAGCTGGTACACCGCCTCAGAATCCCAGCTGAATGCACAATTAGAAGGCTGGCTATCTCAAGCGCAATCCACAAAAAGACCTGCTAGAGCCATTATCGCACCGCATGCTGGCTATACCTATTGTGGAGCCTGTGCAGCATATGCCTATAAACAGGTGGATCCAACCATTACTAGAAGAGTTTTTATCCTAGGACCCTCGCACCATGTACCGCTGTCTCGCTGTGCACTTTCACCTGCTGAGATCTACAGAACACCGCTGTACGATCTGAGGATTGACCAGAAGGTTTATGCTGACCTTTGGAAAACGGGGATGTTTGAACGCATGAGTTTGCAAACGGACGAAGACGAGCACagtattgaaatgcatttgcctTACACTGCTAAAGCTATGGAAAGCCATAAAGATGACTTTGCAATTGTCCCTGTTCTTGTGGGTGCTTTGAGTGAATCCAAGGAGCAGGAATATGGGAAACTTCTCAGTAAATACTTGGCGGATCCTAGTAACCTCTTTGTGATTTCGTCCGACTTCTGCCATTGGGGTCAGCGATTTCGTTACACATATTATGATGAATCCCAAGGGGAGATCTACAGATCTATCGAGCACCTTGACAAAATGGCTGTAGCAGAGCTGAAGAAGAACGGAGTGGACATGAATTTCTCTTTCCTAAACTATGCCCAGTCGAGCCAGTGCCGGAACTGGCAGGACAGCTCTGTGAGTTACGCGGCTGGAGCGCTGATCGTCCATTGAGAGCAAGGCACCTCAGGACGCCACTCGTACCCGCTGGCTCCGCCTCCCTACCCCCAGCCCCGGCCCCAGCCCCGGCCCCAGCCCcggccccagccccagccccagcctcGCCCTTTGGAGAGACTCGGATAGTTCAAAGTGCTTGGGTatcttatattaaaaaaaatataaaaataaatatatatgtatatccccccctccccacccactttttatttttctttcctcttttcatATCAGGGTTCCCACACATCCTGGAAAATTGTAAGAAACTCTGGGCCTGGAAGAGTAATGATTACGTTCAGGATGTTTTCTTAGTATTACCAGTGACTGCTGTGTATTAAATCTGGTCATAAATGCTGGATGAGATTACGTCACCGTTTGTGGTTTCATGACATTTCAGTGAAAGGGTGAGCAGAAGTTTAATCCCAATCAAATGGTAATGATGctttcattagttttaattGGGACTGTGCTCTGTACTAAGCTAGAAATTCTTACTGATAAACCTCTGCAGTATGAAGGCCAAAGCGTAGGGTCTACAGATGAAACTGCTATAGGTCTGCTTGCTGTTTAagctaaacacacacatttacatccTGTTTTGTACAGAGGTCATTTTTCTTGTCTAGTCCTTTCTGTTACATGAAGCTCGCACGAAGAGCTTAGACCAATAATATTCCTCTAGTTCTAGTACAGAAGAGGTCCATTAGTGTGATGCAATCGTTCTGCCATTTAGGCGCCACATTTCCATTTGCGGTTGGGGGGGCAGCAGAGAAGGCTGCAGGGATCAAGTAGTCATAAACTTAACTTGCAATAGGTACCACCTGGGTCAGAATATGAATCTTGGCAAAGCACAGCAGTACCAAAGTACGATTTTAACCGAAATGTTCAGGTTTACAATTGACCGTGATATGACACTGTGGTAAGCTAAAATTGAAGACGCACAATGATGGGTGTGAGGGGTGCTGAGGATGCTCATAAAAGCCTTTGTGTAAAATCGCTGAAATGTCATGGGAAAGGtcctggaaaacaaaagagTGGGAACCCTGTCATTAAAGCTGTCCAGCCTAGGTTGTGttggttaaaacaaaaatataagtactttttgttgtgtgtgtgtgtgtgtgtgtgtgtgtagggtggTCAGAGGAGTAAGGCTGGCATACAGTGTGAGCAGTAAACATTTCCGATTCTGCCGTGTTGGATGCGGGGTTGCCCGGGTTCGAAGACTGTGCAGCCCTTGTTTCCAGTTACcaattatttatcttgtttGCACTCTATTGCAGACCTGTGCACATGTACTCCGCTTCAGAGGTTAGTTCTGCATGATTGTAATGGGAAGACACGAGTGGAAGCTTATTAAAGAATCcagaaataagaaaaactgATCTATTAGAATTCTATGTTCTTTTGGAACCTGTGAATAGCAGACTAGGTAGCTACTGCCATCATTGTACAACAGGAACCTACTCTTGTAGTTGCTAATAAAGGGCTACACACAACCAAGTCCACTAACATTTCTGCTGTACAATCtataccaaaaaaacaactcaatttttaaatttatttttactttactttatgaTTAGCTAATTAAAAGTGTGATTTCTGCCAttcttctttgctttttctttcctcttttcccTTAATCATTTGTTTGGGATTGAACCTCTAACAATTGGTAACAGTTTTGATGTTGACACTGGTGTCAGTCTACTAAAACATTATAATCATTGATTGTACAccttaacatgtttttttttgcagttctAGATTTGTCCTGGTTATAGTGTGAGGCTAGCCGTAAGGCAAGGTTACTCCAAGGGGTTTTCTCTGATTGAATCAAGGGAGTTGGCGTCTGAGTCCAAGAACCTCTGTCTCTGTGAGAGAAACTCAATTGCTATACAGTGGAGTTTGTATTATCTCAGGTTCAATTGATAAAGCACCCAGTATACTCTACAGATATGATCTACtagctgaaatgttaaaaacaaaacgaaacaaaaacagtaaaatgcTGAAACGCATTGTTTGCCCCGTGTCTTTTGTTTGAACCCGTTTCTTCTGCACACGTCCAGGTACATGAAACGTACAGTAGGGAGATGCACTTTAAAGCAACTCATTAAACTGTATGGCATTCAGGTGTTCAATTATCACAAAGACCTTTCCTTGAATTTGACCCTCTAATTAGGAGTGTTGTAACCAAGTCCATTTCCTCAATAGGCCAATTCCCTCGGTAGCACAATTTAAAGTTGAATACAACTTTTCTATGGAAACCCAGCTTGCAATTTCATCCAAacataatcaatttaaaaataagcttttattACCTTTCCAAATTATCTGATAAACCTTTTGAAAGGATGGTTGAATACTATGGTGATAATATTGTAACCCAAAATCCACTCATGCCAGAAGGGAGATTTGTTCCTGGATCTACACAGGGTAAATCTAATGGATGAGATGCACATTCATCAGCACCAATGTAGTTTTGACAAGCTGAGCacaggctgggattaaatcaagtTTGACTGATCCACTAATCACCAGTTACACACTTGTACTCAATGGTGGCTTTTGTTCTTGACGGAG

Function

GO: NA

KEGG:

id description
K06990 MEMO1; MEMO1 family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200005 lncRNA upstream 443456 8302550 ~ 8304840 (+) True G158857
TU199985 lncRNA upstream 491107 8165773 ~ 8257189 (+) True G158837
TU199968 lncRNA upstream 645881 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 709755 8035301 ~ 8038541 (+) True G158788
TU199909 lncRNA upstream 748584 7997910 ~ 7999712 (+) True G158771
TU200229 lncRNA downstream 18427 8776937 ~ 8777745 (+) True G159041
TU200303 lncRNA downstream 451610 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 557601 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 1104450 9862960 ~ 9863228 (+) True G159170
TU200388 lncRNA downstream 1110658 9869168 ~ 9869603 (+) True G159169
AMCG00001605 mRNA upstream 8274 8738472 ~ 8740022 (+) True AMCG00001605
AMCG00001606 mRNA upstream 82635 8659527 ~ 8665661 (+) True AMCG00001606
AMCG00001599 mRNA upstream 116835 8606654 ~ 8631461 (+) True AMCG00001599
AMCG00001602 mRNA upstream 173279 8570684 ~ 8575017 (+) True AMCG00001602
AMCG00001600 mRNA upstream 180340 8541363 ~ 8567956 (+) True AMCG00001600
AMCG00001604 mRNA downstream 4611 8763121 ~ 8774091 (+) True AMCG00001604
AMCG00001610 mRNA downstream 46811 8805321 ~ 8815317 (+) True AMCG00001610
AMCG00001614 mRNA downstream 188903 8947413 ~ 8966738 (+) True AMCG00001614
AMCG00001613 mRNA downstream 259356 9017866 ~ 9028794 (+) True AMCG00001613
AMCG00001617 mRNA downstream 335259 9093769 ~ 9135363 (+) True AMCG00001617
TU199983 other upstream 586481 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 814741 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 1001316 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 1010406 7736515 ~ 7737890 (+) True G158672
TU199732 other upstream 1068513 7671314 ~ 7679783 (+) False AMCG00001550
TU200393 other downstream 1154798 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 3571478 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 5511105 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 6573110 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 6673827 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile