RNA id: AMCG00001604


Basic Information

Item Value
RNA id AMCG00001604
length 3098
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00001604
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8763121 ~ 8774091 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttgcatttgtattctgAGTTGTTATACACAGTTATTTTctgataattaaacaaatatctaGTCATGTGctaataaccttttttgttggcTCTGGAAAAATTAGTGCTTTGGGTCAAATGCAATTTTGGATTTACAAATGAACCTTTCTCCTGAACTTGTGACTCTCCTTGCTTGTGACTTCTCTCCTGTGTTACTTTGTGACACAGAACATGAATCGGATATGAGTAAGGGCGAATGCGTTTAGTTTATCTTTGTAGATTATGTTAGGCTGATGAAGAGAAAAGCTGTAATGATAAGAAGTTGACCACAGAAAATGATTGGACATTCATTGGTAATGAATGGGCGCAGTGTGGAGtagaggtcagggctctggacacGCTGGAGGCTTGTGGGTTCAGTCACAGTTGGGGGATTCTCCttcttgagcaaggtactttacatGGCTTGCaccaataaaaacacagctgtagaAATGACTAATGTTTGTAAAAACATAATGTGGTATATTTAGAATTGTATGTGACCCTGGATTTCcttagaaatgtaataatgtattatactcAAAGAAATATCTGtctacaaaaatatttatagcaAATGTGTAATTATACCAAGGAAAGTCATTAGGGGTTGCACAGCTGATAAGTATATGCTAAAGTGGATACTCTTGCACTAGAAATACTGAACCAAAACATTCGACTTGCGAAGCCTTCTCAGGTTACTTCACTGGATTACTATTTTGACTATGAAAAAGAGACAGGGAGGAGTTTGCATTCTGCGTGACTTTACTTTCAGTAGGACAGCACCTTTCACATGAGCTGGGAACTGCTGCACAGGGCTTATTGTACTGCCGATCAGGATACAATGCAGTGCCACGTGGATCTGATGCAGTGGCTGAACTGGGTGTTTATCTTGGCAGGGGTTGCTTATTTCTTCAGGCAGAGTTTTGCTCACACTCCTTACGGGCGCTATGTTGAAGGCACAGAAAGCTGCTGGATGGTGCCCGCTAAAGCTGCCTGGTTCATCCAAGAGGTGCCATCCTTCCTTGCGCCTGCAGGTTTGTGCTACTTTTGCAATGGGAAGTCCAGCATCGGGAGGAATCTGCTTCTAGGGACATTCTGCTTCCACTACATCCAAAGgcAGCAGACTTTTGATTCGGATGCGCTAGGTCCACCTGCGCACGGCGCGCTACCTGGCGGGACCCTTCCCATAACCCCCCGCTGCCGCCCGGCCCTGCCAGGCTGGGAAGTCACCATGTTGTCCTGCAAAGCCCTGTCTGTTACCTATAGCTGTATGCTGACTGCGGGGGCCGTCGTGTTAAGCTACAGACAGAGGTCGAGACAGACCCCTTACGGGCGCTATGTCCGGCACTTTGGGGCTTGGAAACCGGTGCCGGCGAAACTGGCTTGGCTGGTGCAGGAGCTGCCGTCGTTTTTCGTGCCGCTGCTGCTGTGGGCCACCGCGGGCGAGACCAGCGTGATAGGCAGGACCCTCCTGCTGGCGCTCTTCTGTGGACACTATTTCCAAAGGTCCTTCATCTACGCTTTGTTAACCAAAGGTCGCCCTTCTCCTTTTTTCATTGTGGTGTCTGCTGTGATCTTCTGCACGGTCAACGGCCTGTTCCAGGGCTCGTACATGCTGTTCTGCGCGCAGTATGACGAGGCCTGGCTCACTGACATTAGACTGATTCTGGgtttaactttgtttttccTGGGCATGGCCATTAATATCCACAGTGATCACATTCTGCGCAATTTGAGACAAACTGGGGAGGTCGTGTACAAGATTCCCAGAGgtgGCTTGTTTGAATACGTCTCCGGTGCCAATTTCTTTGGGGAGATTATCGAGTGGTTTGGATATGCTATAGCAACCTGGTCTTTGCcagctttttcttttgcctTCTTTACGATGTGCTCCATTGGACCCCGAGCCTTCCACCATCACAGGTTCTACCTCCAGAAATTTGAAGATTACCCAAGAGCGAGAAAAGCTCTAATACCATTCATCATTTAAGAAGACATCCAGAGCGCTCCATTGCACAGATGTTTATCACTTTCTTAAACATGACCATGTTAAACAAAGACTATTCATTTGGTTACAAACTCAGTGTTGTACATGGAGCgtgtaatttatttcacttttccCTGCCAACAGTATGATTAGTGTAAACACTGTCCCTGTTGAGTTTGACCAAATGTCTTTTCTCTACCAAGAAGAATTGGGGGATCATACAAGGTTATAAGGGTTTCCTTTTGCGGAACATATTGCCGTTTCATTATTGCAATCCTTTTCTGTGAGGTTAAATGGCTGCTCAGGTGTTTCCTTTAATGTGTGAAGCCTCATCTCATTCTAATGCATTCCATCCTCTATTGTATATGTCCTCAGCTGGGGTGTCTTAATCCAACCTTCCAACACAATATTTGCATATCAGAACACGGGGAAGTTTACAATTAAGAGGAGCCCATTTGGATTATCTTGCTCTTATGAAGTAATTAAAGCACAAGCAGTCAATGACATGGCTGGATAGATTGAACCAGATTGTCACAGCTTTAGTTGTAAAGACTTGTCACCAgttttctgtcctgaatgcTCTTaaatttgtttccatttattttaaactttatatgcacacaaaaaacCTTGTTTCATAATATTGTTCATAAATTATCTATACCTTTTGTAGCCTTTGATTTGCTTTGCAGTCAGATACATTTCTGTTGTACCTTGTAATCGTTTGGTTGTACCCACATTCGAGTGATTCTGTAAAGCACATTTCCCCAATCTGtttctctttaaataataaagtttgcTCTTTTGAAATTACAACTCGGTGTCAATCAGTTACCGATTTCATTGGAAAGTCCAATTTAATCAAAAACCTCTTTCTGGATCAGAAGTATTTGATAAAACGAGCAACAAAAATCAGGAATCTCTTTCCCTGGAAGATTCATTGGTGTTTTAATCTTACTGGCAACCCTGCCACTCACTAAATCAGAAACAAAGTGCCCCTTGCCAACTGGGAAAGGTGTCGTCTTGCCTCTCCTACTCAATCTGTTCAAAAACCGAGGAAGTGGGATTTGTCTACATCTTTTTGT

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K12344 SRD5A2; 3-oxo-5-alpha-steroid 4-dehydrogenase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200005 lncRNA upstream 458281 8302550 ~ 8304840 (+) True G158857
TU199985 lncRNA upstream 505932 8165773 ~ 8257189 (+) True G158837
TU199968 lncRNA upstream 660706 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 724580 8035301 ~ 8038541 (+) True G158788
TU199909 lncRNA upstream 763409 7997910 ~ 7999712 (+) True G158771
TU200229 lncRNA downstream 2846 8776937 ~ 8777745 (+) True G159041
TU200303 lncRNA downstream 436029 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 542020 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 1088869 9862960 ~ 9863228 (+) True G159170
TU200388 lncRNA downstream 1095077 9869168 ~ 9869603 (+) True G159169
AMCG00001603 mRNA upstream 4611 8748296 ~ 8758510 (+) True AMCG00001603
AMCG00001605 mRNA upstream 23099 8738472 ~ 8740022 (+) True AMCG00001605
AMCG00001606 mRNA upstream 97460 8659527 ~ 8665661 (+) True AMCG00001606
AMCG00001599 mRNA upstream 131660 8606654 ~ 8631461 (+) True AMCG00001599
AMCG00001602 mRNA upstream 188104 8570684 ~ 8575017 (+) True AMCG00001602
AMCG00001610 mRNA downstream 31230 8805321 ~ 8815317 (+) True AMCG00001610
AMCG00001614 mRNA downstream 173322 8947413 ~ 8966738 (+) True AMCG00001614
AMCG00001613 mRNA downstream 243775 9017866 ~ 9028794 (+) True AMCG00001613
AMCG00001617 mRNA downstream 319678 9093769 ~ 9135363 (+) True AMCG00001617
AMCG00001616 mRNA downstream 375926 9150017 ~ 9155016 (+) True AMCG00001616
TU199983 other upstream 601306 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 829566 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 1016141 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 1025231 7736515 ~ 7737890 (+) True G158672
TU199732 other upstream 1083338 7671314 ~ 7679783 (+) False AMCG00001550
TU200393 other downstream 1139217 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 3555897 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 5495524 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 6557529 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 6658246 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile