RNA id: AMCG00001617


Basic Information

Item Value
RNA id AMCG00001617
length 5540
RNA type mRNA
GC content 0.44
exon number 14
gene id AMCG00001617
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 9093769 ~ 9135363 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCTACTGCTTTTCTGCTGTTCTTCTGCAGTGCTGGATGCCTgaaacatcttttttttttttttttttaccatctgTGTGTCCTGTCCTCAGGTGCACGAATCCTTGAAATGAATCCCCTGAAGGGCGACGCAGGTGCCGCCCTCCGGTCTGCACAGGTAAAATCAATCAGGAAACATGTCACTTTTATTGTACAGAGCTGTTGCTGTGACATTAGGGGGGGGAGAAGAACCAACCATGAGTAATCAGTCTGTGAGCAAGCATAGGCAGGGCTGAAGGCAGTCCCCTCCGCGCCGCCACCCAGCAGACCGGTTCCTTACCTGGGCTGCGCTCACGAAACTTTCGGCTTCACTTCCTGCATTGCACAGACAACACCTATCTGAGGCGGCATGGCTGGCACTGGCGAGCCGGTCGGTAACGGAAACGTGCCAGTGCCTTCACACCACAACCACCTGAAGAGTGACCCCGTCGCCAGAAACGGACTGGGCAAACATCCCCAGAAGAATGGCACGGTGAACGGATGCTACAACAAACAGAGCTTTAAGGAGTCATTCGAACAGGCTCCTCTTTATgttgctgtcctcacctacaTGGGCTTTGGAGTTGTGACCCTGTTCGGTTACTTAAGAGACTTTCTGAGGGCCGTTGGCCTTGAAAAATGTCACCAAGCACGAGAGAGGGAGGAGCAGAAGGACTTTGTCCCACTTTACCAAGACTTTGAGAACTTCTACACACGCAATCTATACATGAGAGTGCGAGACAACTGGAACCGGCCCATATGCAGTTTACCAGGCCCTCTCTTCGATATGATGGAGAGGGTCTCTGATGACTATAATTGGACCTTCAGacacacagggaggaaaattgaaaatgtaataaatatgggCTCCTACAACTACCTGGGCTTTGCGGAAAATAACGCCAACTTCCTGACCACAGTAGCCGAGAACTTGCAAGAGTATGGTGTTGGGGTCTGCAGTACCCGCCAGGAAATGGGGAATCTGGATATCCACAAAGAATTGGAGGATCTGGTGGCTACCTTTGTTGGGGTAGATGCAGCCATGACCTTTGGCATGGGCTTCGCGACCAATTCGATGAACATCCCAGCTCTTGTGGGCAAGgGATGCCTTATTTTAAGCGATGAGTTAAATCACACATCACTCATCCTAGGAGCCCGGCTGTCAGGCGCTACAATCCGAGTGTTTAAACACAACAacATGCAGAGTCTGGAGAAGATGTTGCGCGAAGCAATTTGTAACGGACAGCCTAGAAGCCACCGGCCCTGGAAGAAAATCCTCATTCTTGTGGAGGGAATTTACAGCATGGAAGGGTCTATTGTGCGGTTGCCAGAGATTGTTGCCTTGAAGAAGAAGTACAAAGCTTATTTGTACTTGGACGAGGCTCACAGTATAGGGGCCGTGGGGCCCACGGGGCGAGGCGTGGTGGAGTTCTATGGGCTGGATCCGTCAGACATCGACGTACTGATGGGCACCTTCACCAAGAGCTTTGGAGCGGCCGGGGGGTACATAGCTGGCAAGAAGGAGCTGGTGGATTATTTACGAACTCATTCTCACAGCACCGTGTACGCCTCAGCCATGTCACCCCCTGTGGCCAGACAAATCATCAGGGCCATGAAATGCATCATGGGTCTGGACGGGACAACCGTGGGCATTCAGCGAGTGCGACAACTGGCAGAAAACACAAGGTACCTCAGACAGAAGCTCCACGAAATGGGTTTCATCATTTACGGCAGCCAAGAGTCTCCCGTTGTCCCACTGCTGCTCTATATGCCGGGGAAAGTCGGGGCATTTGCCAGGGAGATGCTGAAGAGGAAGATTGGAGTAGTAGTGGTGGGCTTCCCAGCCACTCCCATCACGGAATCCAGGGCCCGGTTCTGTGTGTCCGCAGCCCACACACGCGAGATGCTGGACAAGGTGTTGCTCGCTCTCGACGAGTTGGGCGATTCCCTCACGCTGAAATACTCCCGGAAAAAACGCAGCGCAGGGCGGCCAGGACTCCACGACGAGACAGACTTTGAGCTGGACAGCTGAGCGCCACTCTTATCTGAGCACTGGGATAACCAAGACTGAATGTaaataggagtttttttgtatttatctttattgACAACAGGTGAAAGGTGGcacacacagggaaaaaaaaagaagttttTGAAGAGCAACCTTCACAGTTGATATTTGAAGATGTAAATTGAGATACTACGCAAGCATTAAAtacatggattttttttaaatgttgatttgattgtttttcgGATCATTTGTGTTAACATTTGATGAAGGATATGCAAACGTGGAGGGGAAGAAAAACCGGGATTCACATTGACCGATCAAACTAATGTTTCAAGTATCGTTTTAGACGTACGCTAGATGTGCATTGTGAAATGTCCGAATATTCATTCCAGACGGGTCAATTTATCGAACACAAATTTAGACCTACCTGCCAATCACAAAGGAGAAGCCCAGTCTCTCATGTCTGGCGTCTGACAAATAATAAGCCATCACTGGGTTTATAATTTGCGATTGTCAGGGTTGTGAATGAATGAAGGACTTTTTTGTGTAAATGGTTCCTAATGCTGCACTCCAGATTTTATAATGATGTTTTTTGTAGTACCTCAGCTgctctttttttctcaaaataatttCAGTGACCTTCAAGAGTAAAttgctttataatatattgtataataatataatatattcttgTGATTTTCTCCTGTAAAGtgaattttattaattattttattaatgctttTAGTAATTGTCATCACTAAGGATCACTAGTAACTGCTTTGGAATATCTATTTTTGGTTTATATATGtgcatagttatttttttttatttatttttttttataacgaAGATATGCATGGGTTCCCCTGTACTGCACCCTGTTACTCGTTACTGTTTTAACTTGCACAGAGGATCTGTACGCTCAAGCTACGGCCAGTTTTGAGCAGCTGAAGCAATGCTGAAAACACCAGTGgcaataatgaaaaaaacacccTAAAGAGCTGCTTAAGACACCATTCCACTACAGCAGTATCCTAATATTGAACATGTTgacatggggggtggggggagtcaTTCAGAAAATCCGAATTAAAAGAACTATAAAACACTATCAGAGAGGTTCTTGAAATTTCCCCTGCTGCAGCCATCGCAGTCTGTATCTGAATTGAAGCATTCTGGGTATGTACAAAATGAGCCAACATTAACTTCAACTAGCAATTAGAGAGGAGCTAAGAATTCTTAAGGTATGGGatagtttttattaataatggaaaGAATTTCGACGgatataataaacatttcagtACCTGTCAAATTTGTACTTgtctttgcttgttttttttgtttttaaatcccctgtgtgtttttccccatcGCATAAACACCCCCAGCGAGAGGACCCACTTCATGAGAGGAGTGGAAGCGGCTTGCTTTTTCATAATTGGAAATGAATCGTGCCGAAATCCCTATTTATGTGTCTGCAGATGGAAATGTCAGGCACATGTCAAATAAGCTTTGACAGCAATTTGGAAAGGAACTGCAAGGCTCGTGTTGCGGATAGCTCTCCTTTTGCTTTGTCTGTTCATAGACGTTTGGTGGGTGATGTGCTTTAGTGAAGATGATTCACGATGTCCGTCAcacatgaatacaaatgaagGACGGAGACATTAATTCTCTGCCACAAAAGCCTCGTCTTCCGCTCCTAGGTGGTTTGGtggaaaagggggaaaaaactatgGAAACTAGAAAAAATCATATTAACTAATAATGCATGGACAAAGTCAGACAGCCCATCTTCATGTCAAGAGCCAATTTAAACTTTCACAGGCCAAAAGGAGATCAGTGCTGTGTAataaactgctgtgtgtttgtggctCCCGTCGAAACAGTTTGTGGCTGAGAAGGCCCTGCTTCACACCTGTGTAGTTTTGGCACTAAACTGCCAGTTGGTGTGTAACATCTGAAGGCTCTTCTGATTTGGGCGACCGTGATCAATCAAGGCAGTCTTTGATCTGGTAGCACAGGTTAGTGCCAGATCTGATACCATGTCAACTCGCAGGACGGTGGCATCGGTGTCCCAGCGAGAGGTAGCACTCCATGTTCTCTGATCAAGAGCACAGAGGATAATTAGATTAGAGTGACATCCTGCCCAAATGGAGAAAGTTAACACACATTTCTCTGACTTCACTTCAAAGTTGGATTGTGTATTCAGCCCGGTTCAGTAGACATGCTCTCAgagtgacattttgttttgtttgtttggtttagaaAAGGGATATTTTGGTAACagtctttttaagaatgtatttcttatttgttttgaataatgtaCTTTCTGATGTTAAAGCTTGTAATTGATTTGGGGggaaggacacacacacaaatgttcCATATATTGTTCTTATTTCTATTGCTTTTTTGTCACATTTGTACGAATCCAGAATGTTGGATGCCTGAGTACCAGCTTCCTCCCAGACCTCTGTCAGTCTTACTGGGTGTCAAACTGGAAACGTCTTTGTGCAAGTCCATTCCAAACTCGAGGTCCTGTAAGacatcattttgtattaaatatgcttTAATAATATTTCCCAGATCACCCCTTCGCCTCTTTAATAAGCCCTCTGGACAAATTTGTTCCATTTGTCTTTGAAGACatattcctaaaataaaataataatcaatcacCGCAAGCAGCTCTGCATTTCACATTCCGCATTACAGAAGAATGGCCTCGTCTCGCTGCCTCAGACAGGAAGTGAAGGGTTATCACCTAACTGCTGGCCTTTCATATAATATGGTGGCTGTTCCAAGTTCATGAACTCCAACAACCctgcaaagtaaaaaaacaaggcAGATGTATTGTATATGCTTTGTGGATTGGCGATAATAGCGGCTACTTTAAAGTGTGGATCCTGATCGAATCCAGGCATTTTATTATAGTCAAAGGGTAAAAGCTCATCAGCTATTTGAAGGGTGCTTTTTCGACTGATATTCTGGTATTTTCAAGGAACAGATCCAGCACTAGActgtcacactttacaataaaggTCAACTcttctgagttctgctgttaatcacaggTATAAGAAGCTGAGGGTCAGGGATAGggtttatacatgtgatcaacatcagaactcagtggaagtgcatgaggcattcCGTGGGATTCAAATATTACTTCCCAACAATctgtgcccattattgtaaaggaCTACAATTTTTTCCATCCCTAAACTGTCTCTAACACTTAGCTGGGCATCATTCAGAGACCGAAAATGGCACATTGGCACCGCAGAAAAAAAAGGTCAGAAATGAAACCTGttcatgtattttcttgtttcttttgcGTTAATTTCTCTAGGCATGTACGCAAGGACGGTATATCTTGAACCGGTGAAAGACACATGGGTTTGAGGAATGCAAGGATGAAGGACTGGGGTTTCTAGTAAGGAGTCTGCAGCCTGCAGTCGGTTAGCCCGTAGAATGTCAAAGGAGCTCGTGTCTGC

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016740 transferase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200229 lncRNA upstream 316024 8776937 ~ 8777745 (+) True G159041
TU200005 lncRNA upstream 788929 8302550 ~ 8304840 (+) True G158857
TU199985 lncRNA upstream 836580 8165773 ~ 8257189 (+) True G158837
TU199968 lncRNA upstream 991354 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 1055228 8035301 ~ 8038541 (+) True G158788
TU200303 lncRNA downstream 74757 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 180748 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 727597 9862960 ~ 9863228 (+) True G159170
TU200388 lncRNA downstream 733805 9869168 ~ 9869603 (+) True G159169
TU200427 lncRNA downstream 934567 10069930 ~ 10070334 (+) True G159204
AMCG00001613 mRNA upstream 64975 9017866 ~ 9028794 (+) True AMCG00001613
AMCG00001614 mRNA upstream 127031 8947413 ~ 8966738 (+) True AMCG00001614
AMCG00001610 mRNA upstream 278452 8805321 ~ 8815317 (+) True AMCG00001610
AMCG00001604 mRNA upstream 319678 8763121 ~ 8774091 (+) True AMCG00001604
AMCG00001603 mRNA upstream 335259 8748296 ~ 8758510 (+) True AMCG00001603
AMCG00001616 mRNA downstream 14654 9150017 ~ 9155016 (+) True AMCG00001616
AMCG00001618 mRNA downstream 83266 9218629 ~ 9229998 (+) True AMCG00001618
AMCG00001626 mRNA downstream 101048 9236411 ~ 9247003 (+) True AMCG00001626
AMCG00001634 mRNA downstream 832052 9967415 ~ 9970362 (+) True AMCG00001634
AMCG00001635 mRNA downstream 835990 9971353 ~ 9972980 (+) True AMCG00001635
TU199983 other upstream 931954 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 1160214 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 1346789 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 1355879 7736515 ~ 7737890 (+) True G158672
TU199732 other upstream 1413986 7671314 ~ 7679783 (+) False AMCG00001550
TU200393 other downstream 777945 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 3194625 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 5134252 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 6196257 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 6296974 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_06334114_06368535.mRNA True 3745 mRNA 0.44 17 CI01000012 6333349 ~ 6369091 (+)