RNA id: AMCG00001645



Basic Information


Item Value
RNA id AMCG00001645
length 817
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00001645
representative False

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10747489 ~ 10757858 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGACGTGCGTGTTGCGTGGGGGACAGGCGCCATTTCGGCTCTGCATGGAAGTGTAAACCGTTTACGTACAAAGCGTATTTAAGAACTCAAACCAGTGCAGAAGAGCAGCCATCCTACTTGGACGTCCATACTTTCTCAGAGAGAAGCCGTCAAGCTTCCTGAAGATATGCGAGGAAACTGTGCCTGGGACAGCCCCTCAGAGCCTTCTTCACAGCGATGGCCGCCATGACGACACAGAAACTGTGCCTGGAACAGCCCCTCAGACCCTTCTTCACAGCAATGGCCGCCGTAACAACACAGTCTTTTCATCTCCCctgaggaagaagaggaagctCTCTGGGAGAAATGAGAGATGAATACTAGAAGCCCCAGGCATCAGTACCCTGGACAGCAGAGTGGACATTTCCccagagcagcagagagagacacctgGATGAGTATGCTGGACGTGGCTGGATGAAGACCTGCATTtctatctctgtgtgtctgtgtaaacaaggtcactatctcactgtgctacggtactgtgccatagttcaaccctgattcCTAGAAGAACAGAGTGctgcttgtaataaaaaccttttgactggaggtacatctctctctggatttctacAACTCTTCAGTGGACATTTGAGGAGAAAGGATGAAGAAACCAAGACCCACTGGGTGACCTGACAGTGTCCTTGGAATTGCCCTTGAAAAGACTTCCTGCTAGCAAGCCCCCCAGCTGCCCTGATAGACATTGGCAAAGAgggttttctttgctttttttggcACTGTTGTAGATATTGTGAGGTGTGTGCAATAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200532 lncRNA upstream 60235 10684782 ~ 10687436 (+) True G159294
TU200526 lncRNA upstream 69817 10669176 ~ 10677854 (+) False AMCG00001643
TU200504 lncRNA upstream 298925 10441947 ~ 10448746 (+) True G159273
TU200477 lncRNA upstream 428527 10315061 ~ 10319144 (+) True G159250
TU200444 lncRNA upstream 587853 10157734 ~ 10159818 (+) False AMCG00001630
TU200592 lncRNA downstream 2118 10759976 ~ 10760189 (+) True G159333
TU200623 lncRNA downstream 83239 10841097 ~ 10843834 (+) True G159356
TU200649 lncRNA downstream 209476 10967334 ~ 10968401 (+) True G159377
TU200652 lncRNA downstream 211543 10969401 ~ 10971236 (+) False G159378
TU200653 lncRNA downstream 211543 10969401 ~ 10972090 (+) True G159378
AMCG00001644 mRNA upstream 29989 10709873 ~ 10717682 (+) True AMCG00001644
AMCG00001646 mRNA upstream 42394 10694966 ~ 10705277 (+) True AMCG00001646
AMCG00001643 mRNA upstream 77762 10655187 ~ 10669909 (+) True AMCG00001643
AMCG00001639 mRNA upstream 521589 10222565 ~ 10226082 (+) True AMCG00001639
AMCG00001640 mRNA upstream 535597 10208776 ~ 10212074 (+) True AMCG00001640
AMCG00001657 mRNA downstream 38870 10796728 ~ 10797750 (+) True AMCG00001657
AMCG00001654 mRNA downstream 94015 10851873 ~ 10870202 (+) True AMCG00001654
AMCG00001650 mRNA downstream 147616 10905474 ~ 10918546 (+) True AMCG00001650
AMCG00001651 mRNA downstream 161397 10919255 ~ 10937919 (+) True AMCG00001651
AMCG00001663 mRNA downstream 234220 10992078 ~ 11042644 (+) True AMCG00001663
TU200393 other upstream 833007 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 2585856 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 2814116 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3000691 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3009781 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 1572130 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3511757 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 4573762 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4674479 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5479404 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile