RNA id: AMCG00001651


Basic Information

Item Value
RNA id AMCG00001651
length 5219
RNA type mRNA
GC content 0.47
exon number 23
gene id AMCG00001651
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10919255 ~ 10937919 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACACCTACAGCACCCCTTCCTGCCGCTGACAcgccatccctccatccctgcACTTGGCTCCGCCCCGGCGCGGTGCATTGTGGTCGCCGGGCCGCTCTCTGCCGTGTTGTTGTCTGATGACTGTGATGGTGGATCGGGGAGGCTGGACGGCTCGGAGCTGCTGTGTTTCAGACGACAGCTAGCCTCCTTTCCGAGGTGTCCTTATGCAATGGCTTCGAGCCACAGTTCCTCACCAGTGCCTCATCCCAGCAACAGTGATGGTATCTTTAAAAAAGAGAGGAACTCCTCTACAAAACACTTTAAGCTTGTCCGGTCACTACCTGATGTGTGTCCAAAGGAGCCCACAGAGGATAGTCACAGTCTATGTGATGGCCCATCTGTTGTAGCTGATCAGCACAGATGGACAGTTTATAACTCGAAAGTCAATCTTCCTGCGGCATTGAATGACCCTCGTCTTGCTAAAAGGGAGTCGGACTTCTTCACAAAAACATGGGGTCTGGACTTCGTAGAGACTGAAGTCATGCCTTCCTTCTACCTCCCAAATGTCACTAAGGAACACTTTGCACCCTACCTTCAACAGACCACTCAGcgaGAAAAAATCCACGAAAAATGCAAGAATATCTGTCCGACAAAGGATGAACTTGACACAGTCTCCAACCTTTCAAATAACCATGGTAAATCAGACCTGGAGCAAGTACCTAAGATTTTTATGAAGCCAGATTTTGCCCTGGATGATCCCACTACGTTTAATGCCGTTTTACCGTGGTCGCATTTCAGTGGTGCTGGGGGGAAAGGAAGCCGTGATCTGGCCTCCTCACGCTTACTTCAAGAGAAGTTGAGCCACTACCTGGACGTGGTGGAGGTGAATATTGCACACCAAATCTCCCTACGGTCTGAAGCCTTCTTTCATGCCATGACCTCCCAGCATGAGCTGCAGGACTACCTCAGGAAAACCTCGCAGGGTGTCAAAGTGCTGCGTGAGAAAATTGCTCAGATTGACAAGGTCATGTGCGAAGGGTCTCTGCGTATCCTGCGGCAGGCGCTGACGCGGAACAACTGTGTCAAGCTCTACAACAAGATGAAGCTCATGGCCACGGTGCACCAGACGCAGCCCACCGTGCAGCTGCTGCTGTCCACCTCGGAGTTCGTAGGGGCGCTGGAGCTGATCGCCACCACACAGGAGGTGCTGCAGCAGGAGCTCCAGGGCATCCACAGCTTCAGACACCTGGGGTCACAGCTCTGTGAGCTGGAAAAGTTAATAGATAAGATGATGATAGCTGATTTCATCACCTATGCCAGAAGTGACCTGAACAGACCCCTGGAGGATGAATGCCAAGTATTAGAGAAGGATAGGCTGGAGTCCTTGGTGTTTGGGCTACTGAGACAGAGAAAGCTCGACTTCTTGGAGATCTACAGTGACGAGATGATTATTGCTGCAAAGAGTATTGTCAAACAGTGCATTATCAACACAGTGTTACAAATTGAAGAAATAGACACAGAAGTTGTCGTAAAgcTTGCCGATCAGATGAGGCTCATGACTTTCCCCCAGTGGTTTGAACTTCTGAAGTACATTTTTGCAAACTTTATACTCTTCCTCCAAAGGATAAAGGCGACACTGAGTGTCATCAGGAATGTTGTTCTGGAAGTGTTGGATGGGAACCAAAAGCATAAGCTGGCCGAGAGCGCTGTGGCTGAAGGAAGTGCGGGCAAAAACCCCCACCCGGATTCTGAAATCGCCTACTTGACGCACGAAGGCCTGTTCATCAGCGACGCCTTCAGCGCAACGGAAACGAGCAGCGCTGGAGCCGATTGCAAGAACCAAAGGGTTTCGAGCCTCCGTACCGACCCGGGTGGGAGCGACTCTGCTTCGGAGCCCGACTGCCCCACAGAGTCCTCATCCAGCAGGGAGCGGACGTCCTCCTCGCTCACCCCGGGGGCGATGGAGATGATagTTAGCGAGGGCATGATGCTGACAGACCTTGAACTCGGCCGGGTGGCCAATAACATTCAAGAGCTGCTGTACAACGCCTCCGATGTGTGCCACGACCGCTGTGTCAAATTCCTCATGGCCAGGGCAAAGGATGGGTCTCTGGAGAGGCTGAGCTCGTCCGAGTTCGTGGGGCTCTCTCAGGCCGTGGAGCAGTTTGTGCAGGAGACGGAGGAGCTGTGTGGCAGGAGGAGCATGTCCCTCAGGGGGGCGCTGCAGAGCCAGGCCAACCGCTTTGTCAATCGCTTCCACGAGGAACGCAAGACCAAACTAAGCCTCCTGCTCGATAATGAACGCTGGAAGCAGGCAGAAGTTCCTGCAGAGTTTCAGGACCTTGTTAACTCTATTGCTGACGGGAGGATTACTTTACCAGATAAAAAGCAAACGGCCACAGAAGACCGGAAGCCCAGTGACTACCTGAGTGTTGATGGACAGAAGTACACTGTTGTTGGGACGGTCTTGCTGTTGATCAGAATTTTCCTTGAATACTGCCAGTGTGTGAACGACATCCCCTCCATAGCCACCGATATGCTCACTCGCTTGTCAGACTTACTGAAGCACTTCAACTCCCGGAGCTGCCAACTGGTCCTCGGGGCTGGGGCCCTGCAGGTCGTTGGTTTGAAGACAATAACTACAAAAAATCTGGCTCTTGCCTCGCGCTGTTTGCAACTGATCGTACACTACATTCCTATAATCAGGGCTCACTTCGAAGCCCGGCTGCAGCCCAAACAATACAGCATTCTCAGGCACTTTGACCACATTACAAAGGACTATAATGACCATATAGCTGAAATCTCGGCAAAACTTGTAGCAATCATGGACGGCTTGTTCGAGAAAGTTTTGTCCAAGtatgaAGTTAAGGCCCCTATGCCATCTACCTGCTTCCGAAATGTCTGTAAACAAATGGCCAAAATGCATGAAGCGATATATGATCTTCTACCTGAAGAACAAACACAGATATTGTTCTTGAGGATAAATGCAAGCTTTAAACTCCATTTGAAGAGGCAGCTAGCTCGACTCAATGTCATAAACGACGGGGGACCGCAACACGGTCTGGTTATGGTAGATATAGCTTTTTACACTGGGAATATCCAATCACTGAAGACACTTGAAAATCTACACTTGAACATGGCAGAGATCTGGGAGCAGAAGAGGTGATGCTCTAACTGGAAACTCAAGCCTCGTCCATCGCATGTCAGGATACGCTTCTCAATTCTAAGACCTTTTCTGCCCTGGAACTGGATTCCCAGCCCAGAGCCGTGCCGCAGCGGGGCCCCTGGGGGCCGAGGGTGAGCGTGACCGGGGAGGAATGCCCCGAAGAGGGCTTTGTGGCCAGGCCAgggatgctgctgctgctgctgccctgtGACTTATTACACTCTTTAGAAAGACTCAGGTTTCTCTGGACCAAATCGCAGCGTGGATATGTCTGTGACACAGCCGGGGCCGCGCCGAAGAGCTCTGTCAGTGAGACGACAGCGCGGCGCATCTGTACTGCTGTGACTTCATCTCATGTGCAATTGAGTTCCAGAAATTCAATCATGGTACAGTTTGTATGACAAAAGCTTTTAAATCCTGCAAGGAggtaaagacaaaaaaaacaaacactatctggtaacttatttttttacagatctTTCTAAAATCTTACTTTTAGATTCCGTTGCGTTAAAAGATGTAAACATTTTGATTCAGCAAGgtatacaaaacagaaatggttaCATGCGTGTAAATCTGGATGTAATTGTACAGGTTGTTAAATGAAatcttatataatatatttgtataaatcctagtttatttgaatgttttgtttcttttggtgTTTCAGTTTTGGTCAAGCATCTTCTGGGTTGGCAGAAggactttttttatttgcagtatCTGCTTATTTAGAACGTTTTAAATTCTGGAGTTGGTGTAAGTGATCGCTTACCGATTTTTAACATCCTCACCACCCATTAGATCAACTGTAAGCGACTTTAAAGAGTGGTGGAGCATCAGATATCGCATTCAACCGTTCCGGTTcagtataatttacattttggctCCAGCGATAAAACCTCGATGTTATCTGAATATAATCCCCAGTATATTCTGTATGGTCTTGATTTAGGTATGCAGTATATTGGATCTGATTCACTGATTGAGTGAATACGTTGATTTAAGCACGCCATGACAAAAGCGAGAAGTCCAAGTAAATGTAACGCACACTCctgtacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatatatgACCAAAGGTCCCTAGCCCTAACATGATCTCTCAAaaggacatttgtttttaactctaCAATCTAAGTTATCTCTGGTATTGCAGTAGGCAAACAGGAATATCAATAGGAAGGGGCTACTGGGCGTCAAGTGAGAAGTATTTATAACCACAGGGGCAATTTTGGTTCAGTTGTGGAAGATGACACTGAGGAGTGTGGACAGCAGCTCGATTTGGGAACATCAGGGCCCGTGTGAGGAGATTCTGAGGTGAACTTACAGATGCCCTTGGTGCTGCGTATTCTACCAAATGTAACCGTTTTGTGGCCATGGTTCATAACCTGCCGACGGTGGAGCCACGGCTTAAAATGAACTTGGGCAGAATCCCACAGTACACGATCTACACGGACAAAtctatttaaagaaagaaaggagttGAAGCTAATTTAGAGAGCTctttattccaaataaatatttataaatggttttaatcatttttaggTTTTGGGAAATAATTGTGGGACTTTGTAGAGGAGGTAGCGTGGAATTTTGTCTGTCGATTGTGGCATGTGGGGGGTTGTCCAACTCAGCACATGAACCCCTATTAATTTGCATACTGTCCATATAAACACTGGTGTCTCCTTTCTTCAGTATATGTAACATGTTCCCCCTGTTTTTAACAATCATAGCAGTCTGAATATGAAGTGAGTTGATTCTTACGTTTACaaggtgttttttgtattaacttTGCACCATTGAGTAACAGTGCTGTAAACTCATTGCTAACTCAAAAGTGCCTACTTTTAAATGAGTATCAAAGGCTATGGATTCTTCCAGCAGTATATTTCCTGTTCCAGTGCCTAAGCGATCGCCCTGTCGTATGGAATGGTCCCTGGTTGCTGCACTGGCAGGTACAAAAACTTCAATGGCATGCCTGAGAGTTTGAACTGTCCTGAACCCAAGAACTTTCTCAATAAAACCAATCTATGAAAGTA

Function

GO: NA

KEGG:

id description
K17600 VPS54; vacuolar protein sorting-associated protein 54

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200623 lncRNA upstream 75421 10841097 ~ 10843834 (+) True G159356
TU200592 lncRNA upstream 159066 10759976 ~ 10760189 (+) True G159333
TU200579 lncRNA upstream 161433 10747489 ~ 10757822 (+) False AMCG00001645
TU200649 lncRNA downstream 29415 10967334 ~ 10968401 (+) True G159377
TU200652 lncRNA downstream 31482 10969401 ~ 10971236 (+) False G159378
TU200653 lncRNA downstream 31482 10969401 ~ 10972090 (+) True G159378
TU200738 lncRNA downstream 279400 11217319 ~ 11221908 (+) True G159441
TU200801 lncRNA downstream 498743 11436662 ~ 11439612 (+) True G159483
AMCG00001650 mRNA upstream 709 10905474 ~ 10918546 (+) True AMCG00001650
AMCG00001654 mRNA upstream 49053 10851873 ~ 10870202 (+) True AMCG00001654
AMCG00001657 mRNA upstream 121505 10796728 ~ 10797750 (+) True AMCG00001657
AMCG00001645 mRNA upstream 161397 10747671 ~ 10757858 (+) False AMCG00001645
AMCG00001644 mRNA upstream 201573 10709873 ~ 10717682 (+) True AMCG00001644
AMCG00001663 mRNA downstream 54159 10992078 ~ 11042644 (+) True AMCG00001663
AMCG00001665 mRNA downstream 337365 11275284 ~ 11280488 (+) True AMCG00001665
AMCG00001664 mRNA downstream 343385 11281304 ~ 11287784 (+) True AMCG00001664
AMCG00001669 mRNA downstream 372651 11310570 ~ 11325141 (+) True AMCG00001669
AMCG00001679 mRNA downstream 400448 11338367 ~ 11346415 (+) True AMCG00001679
TU200393 other upstream 1004591 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 2757440 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 2985700 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3172275 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3181365 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 1392069 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3331696 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 4393701 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4494418 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5299343 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile