RNA id: AMCG00001663


Basic Information

Item Value
RNA id AMCG00001663
length 3296
RNA type mRNA
GC content 0.53
exon number 18
gene id AMCG00001663
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10992078 ~ 11042644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTTTGGTATCAGCCGCCAACCAGCAACGCCCATGTCCCTCTGGCGATGTCTGGCTCTGGTGAGAAGGGCAGGTGGCAGAGTGCCCCTCGCCTGACGCAACAGAGACCAGGAGGAGTCCAGGAAAACGTGATCTACTGGTCCTGCCCTGTGCGCCTTCCCTGGCTTCTCTTCACGGTTCAGCACAAATCAGGAGTGGGCTTCACCACAGCCTGCAGCCTCGCCGGCGCACAGGAGTGGAAAAGAGAGTTGCGTCAGAGAACCCTAACACCCATCAGGAGAGTTATCTTTtatgttgttgtctttttttttccattcttgtTTCAACAGAATCAAGtttcccttcacaatcagatGTCTTTCTGCCTGACTGAGCTGCACTTGTGGTCCTTGAGGAGTTCCTTGCATGTCAGAGATACAGATATTGGCACGTATCAGTACTATGATAAAGGAGAGCCAGtcACACCGACAGATCATCATTACTTTGAAGAGAAGCAGCATTTTTTGGAAActCGCGGGCATCCATGGACTCCCAAGAATAGGCGTCCCGAGAAACTTCGAGACACGCTGAAGGAGCTGGAGGAGCTGCTCCAAAGCAGCCGCTGTGTTCGAAGCAAATGGAGGAACAAGCACTTCTGTCAGaTGATCCTCGGTTCAGGTGTGCTGGTGTCTCTCAGCCTCTCTGGGCCACAGCTGGAAAAAGTGACAATCGACAAGACCCTGGTGGGCAAGCTGGCCGCTGACACCATCAGTGATGCTGTACTCACTGACAGATTCATGATTTTGACATTCCTGGAGAAAAACAAGGTTTGTTACATCCATTTGACAAAGAAGCAAAGCTCTCCAGACATCAGCAAGAGGTTGGAAAAGCTCTCCTTTTCAGAACTTAagGTCTCCTATGTGGATTTGCCTGGGCCTGCTGGACGCAGACTGGAACGGCGGGTGGCTGTAAACTGCTTGCAGGATGTAGCTATTTGCTGGTGGCCAACAGTTAATGATGATGCCTGGCCTTGGTCTCCCATCTCCAGCGAGAGAGACCGAGCCAACCTGGTGCTGCTGGGCTGTGCAAACGCTAGCCTGAAGATTCTCAGCTGCATTCGCACCGAGTGGGACCCTCTGGACTGTTGCTTCAGCATCACCCAGCCCTACCAGGTCCTGACAGTGGAGCACTCTCTGGGCACGCACAGGGAGTGGATGGCAGACAGCTGTGCGTACGAGTGTGCCCGGGGCCGGATCCAACGGCTGGCAGTCACCAGCATCCCCCTCACCGCCCGGGCCATCTCCTGCAGCCGAGACCCCACGGAGAGCAAGCTTGTCCTGGGCTGCCTGGACTCCTCACTGGTGCTGTACGACGGGCACCAAGGGGTCACCCTCCTCGCCCAGGCAACCGCTCTGCCCTCCCTGGTGGAGTGGCACCCCCAGGGGGCCTTGCTGTTGGTGGGCAGCAGCCAGGGGGAGCTGCAGTTCTTCAACGTGGCCCTCTCGCCCATCAAGGTGCAGCTGCTGGCGGAGGACCTGAGTCCTACCCCCACTCTCCAGTTCAGTCGGCACCTGAACACCCCGGGAGGCCTGGCACGAGTGCAGTGGGCAGCTGCCCGTTTGCCCCCCCATGGTGCAGATGGCCTGGAGGTTCATGACCTGCTGTTCGTCAGCTTCGACGGGGGACCAATAGGAGCCTTGCGTCTCAGACTtgGTGCCACTAACGGGGGCCAGCTGGGGCCAGTAGACATGGCCCTCCAGTGTATCCGCTACAACCAGGTGGACGAAAGTATTAACATCTTAAGTGGCATCAACTGGAATACAATGGGACCGGACTCCTACAGGTGTCTAATTGCCATTGTGGATCATCTACTCCGGCAGAAGTTAACAGTGGATACAGAAGCTCAACTCGAAGCTGCTCTGGGAACCTTTTACGCTCCGTCAAAACCCCTGTCTGACACCACAGTGCTGGAGTACCGGGATGCCATCAGCAAGTATGCCCGACGCTTCTTTCATCACCTGCTCCGGTACCAGCGATATGAAAAAGCTTTCCTGCTGGCAGTGGACATAGGAGCCCGTGACTTGTTTATGGCCCTGAGCACTCATCTCTCTGACTCCCTCTCCGAGCAGGCTCAACTGGCAGCGACCGGCCAGGCCCATCCAGCCACTGAGCCCCTAACGCACCAGCGCTCCCCTCTTAATCACTGGGGgccggcagcagcagcagaagctGTGATCGTTCCCCTTTCTCCTCGGTGCACAAAAGGGGACATCCATTACTTAGCCCTAGATAAGGGGGAATTGGTGCTGGCTGAAGTGGCGAAGAAAAAGGCTAATGAAATTGATGCAGAATCAATAACCACTGGACTGGAAGAGCAGGCTTCCTTGCTTGAAGGTGAGACCCTGAACGAACACCTCCCTGACGCTCCCATGGACAGACAGAAGGTCGGACTGCCCCCCCGAGGGCCCAGCGCAGAAAGAAGCCTGCAGTGCCAAGGCAGTCCCTCTCAGGACAGATCACGCCTCCGACCTTCTAGCCAGACTCTGTCAGGCCAGCTGGGGAGGGAGTTGGCAGTTGAGGCCTATACAGCCGCTCTAATGGACGACCCCTGGGCCTGGACACAGGCAGGAAATAATCTGGCTGAAACCGGAGATCAGGTAATATGCTTTTATCCTCTAACATCCACTCAAGTGAGCACTCAAAACTGCCGTATGATCAATACAGCTCGCCCCTTATCCTGTCTGAGTACCTTGTGTACCTTTGGACTTGTCCTGAAGAACTGCTGTTTAAATCGAGTGATGTGTTTCTTATTAGCATCGAGACTGCCTTTCCGGGTGAATTTAGcatcacattttgattgttaGATCATAATATGACGTGTTCCATAAAAATATTGAATCGGTtccatacagaaatgtattgagAGGCATGGACGTCCTGTTGATACATTTACCCTTACTATGTGGAAGGGCTCTTGCACCCTCTGTTCTTTTGGGATTTTGACACCTTTAAATGTTATTTGCACAAGGAAGTAGTGCAGATTTGCAAGAAATCATTAGTATAAAGAACAGGAACAATGCGTGTGGAAGATTTTTCTTTAGTCCTTCAGAAATAGTGTCCGTGTTCTCCAGGTTGTACTCACGGACAGCAGGTGGACACACTGCAGTTGCTGGCTTGACCATGCATTTTTCAGTGCAGTACATCCTTGAAAAACACAATCGATCCTCTACCTTTGCTAATGTTgtctttataattaatttaccaatttttgtttatcttttagGTAACTGGAGAAACTGGATCTCTCAAAGTAGTTC

Function

GO: NA

KEGG:

id description
K22863 WDPCP, CPLANE5; WD repeat-containing and planar cell polarity effector protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200653 lncRNA upstream 19988 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 20842 10969401 ~ 10971236 (+) False G159378
TU200649 lncRNA upstream 23677 10967334 ~ 10968401 (+) True G159377
TU200623 lncRNA upstream 148244 10841097 ~ 10843834 (+) True G159356
TU200592 lncRNA upstream 231889 10759976 ~ 10760189 (+) True G159333
TU200738 lncRNA downstream 174675 11217319 ~ 11221908 (+) True G159441
TU200801 lncRNA downstream 394018 11436662 ~ 11439612 (+) True G159483
TU200938 lncRNA downstream 583027 11625671 ~ 11647452 (+) True G159594
TU201143 lncRNA downstream 1634167 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 1743151 12785795 ~ 12876686 (+) True G159798
AMCG00001651 mRNA upstream 54159 10919255 ~ 10937919 (+) True AMCG00001651
AMCG00001650 mRNA upstream 73532 10905474 ~ 10918546 (+) True AMCG00001650
AMCG00001654 mRNA upstream 121876 10851873 ~ 10870202 (+) True AMCG00001654
AMCG00001657 mRNA upstream 194328 10796728 ~ 10797750 (+) True AMCG00001657
AMCG00001645 mRNA upstream 234220 10747671 ~ 10757858 (+) False AMCG00001645
AMCG00001665 mRNA downstream 232640 11275284 ~ 11280488 (+) True AMCG00001665
AMCG00001664 mRNA downstream 238660 11281304 ~ 11287784 (+) True AMCG00001664
AMCG00001669 mRNA downstream 267926 11310570 ~ 11325141 (+) True AMCG00001669
AMCG00001679 mRNA downstream 295723 11338367 ~ 11346415 (+) True AMCG00001679
AMCG00001678 mRNA downstream 303915 11346559 ~ 11372681 (+) True AMCG00001678
TU200393 other upstream 1077414 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 2830263 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 3058523 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3245098 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3254188 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 1287344 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3226971 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 4288976 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4389693 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5194618 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile