RNA id: AMCG00001676


Basic Information

Item Value
RNA id AMCG00001676
length 1877
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00001676
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11495066 ~ 11507509 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGTAGGCTTTGCCATGTTGCCTCTGAAGGAGAAGGACAGGCCAGTGGTACAAGCTCTGCTCAAGGCGGGCTGTTGTGTGCGCTGTGTTCTCCGATTCTGCTGTGTGGAGCTGCAGTCCACATACAGACAGCCCTGCAAGGATTTGGAGAGTGAGCTGCACAGCTTTGCCCACACAGAGGAATGCACTGAAACAAATCCTGAAACCGAGGACGCGCAGGACCCTCCGTGTAAGAGACTGAAACTGGAGGGAGAAGGGCACAGTGTAGCTGACGGACAGGGAGCAGTGATTGTCCCAGGCCCGGACCCCCTTCATGCCCACAAGGATGAGTCGGAAGTGTGCGTGGTGTGTTTGGGAGTACTGCAGGACTTCTGTGACCGAGACTTTGCCAAAAAAATGGCAGATATTGTGGATTCTGCTGGCTATCAGTTCAGCAGTCTGGTGGTGTCAGTGTCTCTTCCCCCCCAGCTGTCAGTGAGAGAGCATTCTACCTGGTTACTAGTAAAGAAGGAAGTAGGgcaGAAAGGTCTTTGTCTAGGAAAGGATGATGTGATTCAAATCAAGGAGGCCTACAAATGGATAATCCACCCCCTGATCTCAGCGGAGCTGGGAGTACCTGTGGATGGCAAGGCGAGTACATCATTTCCCATCACTTCTACATTCATAGGAAGCTGCTTTGAAGTGAGCGTAGTGTTCACACATCCAGAGACGGATGGGGACTGCCATTTTCTTGCTACTGTTTGCTCTGACTGCTTCAAACCTGCTAAAAACAAACAGTCTGTTTTCACTAGAATGGCTGTGACAAAAGCATTGGAGAAGATAAAAGACAAGGATTTCCGCAACCAGTTTCCTTGCCCTCCATGCCACCCCGTTACCAAATGTATTGCCCAGGATATCAGTTGTCTTCACAGTCCAATCTTTGTTGCTGGGAGATACAACAAGTACTGCCGGACGCTGCCCCAGACGCCCTGGGTGATCGATGGCGAGAGGAAGATGGAGTCCTCTGTGGAGGAACTAATTTCAGAGCATCTGCTAGCCAACTTCAGAGCCGAAGGTTTTAATTTCTCATCTTCAGGAAGAGAGGATGTTGATGTCCGAACATTGGGGAATGGGAGGCCCTTTGCAATTGAGTTACTTAACCCACACAGGGCAAATTTCACAAAAGAGGAGATCAAACAGCTCCAGCAGGCGATCAATAAGTCCTCGGAAAAAATTAAAGTCCGGGATCTACAGATTGTAACAAGAGATGCAGTTGGTCACATGAAAGaaggggaggaggagaaaaCCAAATCCTACAGTGCTTTAATATGGTCTCAAAGACCCATTGAAAAAGAAGACATAGACTTCCTTAATGATATCAAGGACTGCAAGATCGCCCAGAAGACCCCCCTGCGTGTGCTGCACCGCCGCCCCCTGGCCGTCCGCCAGCGCCTCATCCACACCATGCAGGCGCGCTTCCTAGACCAGCACCACTTCACCCTGCACCTGAGGACGCAGGCCGGCACATATATAAAAGAGTTTGTACATGGGGATTTCGGAAGAACTAAACCAAATCTGTGCAGCCTGATGAACACAGTGACCGACATTTTGGAGCTGGATGTGGAGTCTGTGGATGTAGACTGGCCTCCAGCAATTGAAGATTAAGACGGAGAGAATCCAAGTTCCCATTTACTGTGAAGCCATGTCGTCAGCCTTGCGATAACCATGTATTTCAAGAGGACCTGGAAGGGCTGTGCTAcattgaacacatttaaatagtatatttttttatatttcttctttACGTTCAGAATGCATACTAATGGCTGAAGaactttctacattttattaaatatctgttaaaacatatttggtaaaaaaaaaagttttttttt

Function

GO:

id name namespace
GO:0009451 RNA modification biological_process

KEGG:

id description
K07583 PUS10; tRNA pseudouridine synthase 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200801 lncRNA upstream 55454 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 273158 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 522976 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 523830 10969401 ~ 10971236 (+) False G159378
TU200649 lncRNA upstream 526665 10967334 ~ 10968401 (+) True G159377
TU200938 lncRNA downstream 118162 11625671 ~ 11647452 (+) True G159594
TU201143 lncRNA downstream 1169302 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 1278286 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 1292000 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 2759879 14267388 ~ 14267722 (+) True G160024
AMCG00001677 mRNA upstream 98091 11385284 ~ 11396975 (+) True AMCG00001677
AMCG00001678 mRNA upstream 122385 11346559 ~ 11372681 (+) True AMCG00001678
AMCG00001679 mRNA upstream 148651 11338367 ~ 11346415 (+) True AMCG00001679
AMCG00001669 mRNA upstream 169925 11310570 ~ 11325141 (+) True AMCG00001669
AMCG00001664 mRNA upstream 207282 11281304 ~ 11287784 (+) True AMCG00001664
AMCG00001674 mRNA downstream 105679 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001690 mRNA downstream 580696 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001693 mRNA downstream 810336 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001691 mRNA downstream 822470 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001686 mRNA downstream 827515 12335024 ~ 12348395 (+) True AMCG00001686
TU200393 other upstream 1580402 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 3333251 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 3561511 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3748086 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3757176 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 822479 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 2762106 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 3824111 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 3924828 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 4729753 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile