RNA id: AMCG00001677


Basic Information

Item Value
RNA id AMCG00001677
length 1893
RNA type mRNA
GC content 0.45
exon number 12
gene id AMCG00001677
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11385284 ~ 11396975 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCAATAGATCTCACTATTTCAGTCCTGGATGTGAATGACAGCCCACCAGTCTTCACCAAAAGCAACTACACCACCAGTCTGAACCTGACGTCTCCTGCAAGAACCTTTGTCACTTCAGTTTCTGCTACTGACCAAGACTCGGGAAGTAATGCTGTTGTGGAGTACTACATGCTGGATGAGGATCCTGatagtaaatattttacaatcGAAGACCCGTGCAAGGGAGCTATACTGACGAAGCAGAGCCTCCCCCGGCCTGGGTCGTACAGGTTCTCTGTGGAAGCTAGAGACCGGGGCGACCCCTCCCTGAACAGCACAGCCTCCGTGTTTGTGGACGTCATAGACAATGGGATGTTCATGCCGGAGTTCAATTCCTCTGAAATCAGTGAACGTGTTGAGGAGAACACAGGGTCTGGGCACCTTGTGTACACTTTTTCTGTACTGGATACACCTGGAGTGAGTGTCATCTACAGCAttataaatggaaacaaattgGGTGAGTCTCTAACAGTTTCTGTAGCAGCCCTGTCACTGAACTGTGTTTTTACAGAAACCCTGAATTGGTCTCTCCTGTCCACAGATCATTTCCGGTTGGATGCAAGCACCGGTGAACTGTACACCACAATCAATCTGGACTTCGAGCAGCTGTCAACGTACATCATCACTATTGAGGCCATAGGATTCCCCTCTACCAAGTCTTCACCAGctGGCAAAAATATTGCAACATTGACCATTTTGGTTGAGGATGTGAACGAAGCACCTGAATTCAGCAGCCCCAGCTATTCTGCAAGGATTTTCAAAGTGTCTCCATACAAGACTCCAGTGGTGAAAGTGAAGGCCACAGATCCAGACAGCGGAGAGAAAGGACTTCTGGTGTATAGTTTGAATGAACCTAAAAGCAAGGAGTTTGATGTTGACAGCTCCACTGGGCAAGTTTATGTGGTGTCCTTAAAGAGTGGGACGTTCACTTTCCAAGTGAATGCTACTGACCTCGAGGGAAAGGGATTGTCAGCTGTAACAAGTGTGGAAGTAAGTGCCCTGAATATACTGGAGACTGAATGCATGTCAGAGGAAGGGAACCTGCAGTTTATGGAGCTGAAGGCTCTGCAACAATCAATGGGCTGGAATATACACATTATCGAGGTCAAAGGCATCAGTAATCAAACAAGATCCACAGAAAGCCAGGAAGAGACCTACATCAGTTTCATAGCCTCCAACGCGGACTACAAAATCATATCCACAGTTCAAggtagatgttttattttttatttttttaacatggttaCTGATGCTAATAATATactaaAATTACAAGCAGCAAAGGAGAAAATCAATAATGAACTCCAAGCGATATTTGGagaagatgtttatttttcagtgaaagACGGTTTTAATGAGTTTCAGCCACAGGACCAAATAGCAGGCATTGTTGTGGGTGTGTTGGTGGCCCTGGCTTTCATAAGCTTCCTCATTTATGCTTTTTTACGCAGAAAGGACAATAATTCTCAAGCAGACAGTCAGGTCGTTCAGATTTCTGACACAGACACCTCCATTTTAGTAAATATAGcTGCCAAAAATATTGCAAGATTGACCATTTTGGTTGAGGATGTGAACGAAGCACCTGAATTCAGCAACACCAGCTATTCGGCAAGGATTTTCGAAGTGTCTCCATACAAGACTCCAGTGGTGAAAGTGAAGGCCACAGATCCAGACAGCGGAGAGAAAGGACTTCTGGTGTATAGTTTGAATGAACCTAAAAGCAAGGAGTTTGATGTTGACAGCTCCACTGGGCAAGTTTATGTGGTGTCCTTAAAGAGTGGGACGTTCACTTTCCAAGTGAAGGCTACTGACCTCGAGGGAAAGGGATTGTCAGCTGTAACAAGTGTGGAA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200738 lncRNA upstream 163376 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 413194 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 414048 10969401 ~ 10971236 (+) False G159378
TU200649 lncRNA upstream 416883 10967334 ~ 10968401 (+) True G159377
TU200623 lncRNA upstream 541450 10841097 ~ 10843834 (+) True G159356
TU200801 lncRNA downstream 39687 11436662 ~ 11439612 (+) True G159483
TU200938 lncRNA downstream 228696 11625671 ~ 11647452 (+) True G159594
TU201143 lncRNA downstream 1279836 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 1388820 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 1402534 12799509 ~ 12810735 (+) True G159800
AMCG00001678 mRNA upstream 12603 11346559 ~ 11372681 (+) True AMCG00001678
AMCG00001679 mRNA upstream 38869 11338367 ~ 11346415 (+) True AMCG00001679
AMCG00001669 mRNA upstream 60143 11310570 ~ 11325141 (+) True AMCG00001669
AMCG00001664 mRNA upstream 97500 11281304 ~ 11287784 (+) True AMCG00001664
AMCG00001665 mRNA upstream 104796 11275284 ~ 11280488 (+) True AMCG00001665
AMCG00001676 mRNA downstream 98091 11495066 ~ 11507509 (+) True AMCG00001676
AMCG00001674 mRNA downstream 216213 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001690 mRNA downstream 691230 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001693 mRNA downstream 920870 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001691 mRNA downstream 933004 12329979 ~ 12333700 (+) False AMCG00001691
TU200393 other upstream 1470620 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 3223469 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 3451729 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3638304 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3647394 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 933013 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 2872640 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 3934645 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4035362 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 4840287 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile