RNA id: AMCG00001679


Basic Information

Item Value
RNA id AMCG00001679
length 1998
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00001679
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11338367 ~ 11346415 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGtacttcttttcattttctgtagtaTCTGATGCAGACAGCACCGATGGCTTACAACTGAAAAAGGAGTATGCTCTTAGGATTTTTAGTTACATCAATTCTTGGACCCAAAGGCAGTGTCTTTGTTGCTTTAAGGAGTACAAGCACCTTGAGGTTTTTAATCAGGTGGTCTACGCAGTCATAAACTTGGTGATCAACCAGGTCCAGACCCTCCGGGACCAGCTTTGTAAAACTTGCACTAATAGCGCCGAGCCAGACTGGGCAGGCGGGACTCAGCAGAGCGGCGATGAGACGGTCAACGTGGAGAGAGACTCCAACGAAGAGGATGGGGAGAGTCAGGGGCCCGACCCCGAGGAGAGCAAGCCTGAGTGCTCCAAGACTGCGGAGGACAGTTCCCCCAAGAATCTCGATCCCTTCAGCTCCTGGAGCACCGAGGAGAGGGAGAAGCTGCTGCTGTGCGCGGCCAAGATCTTCCAGATCCAATTCCCTCTGTACACGGCTTACAAACACAACACTCATCCCACCATAGAGgATATTTCAGCTCAAGAAAGCAATATACTAGGATCGTTTTGTGATATGAATGAGTTACGGCAGAGTGCGGCTCGCAACATGGCAGATTTAATGTGGAGTACAGTGAAGGAGCCTTTGGACACGGCTTTGTGTTTTGACAAAGAAAGCCTGGATCTTGCTTTCAAGTACTTTATGTCTCCAACTCTAACGATGCGTTTGGCAGGTCTGAGCCAAATAACAAATCAGCTTCACACGTTTAATGATGTTTGTAATAATGAATCCTTGGTGTCTGACACTGAAACGTCAATAGCAAAGGAACTTGCAGATTGGCTCATCAATAACAATGTGGTAGAGCATATCTTTGGACCAAATTTGCACATTGAGcTAAAGCACTGCAGTCGGTACATACACGACTTGTTTCCTTCCTTGATCAAGAACCTGGACCCGGTGCCGTTACGTCATGTTCTTAATCTGGTCTCTGCACTTCACCCCAGTGCCCACACTGAGCAGACCCTGTACTTGGCTTCAATGCTCATTAAAGCCCTTTGGAATAACGCTCTGGCTGCTAAAGCTCAGCTGTCCAAGCAGAGCTCCTTCGCTTCCCTGCTGAATACCAACCTCCCGatgggaaataaaaaagGCTCCCCAGCTGCTAGTCCTGAGAGTAGCGACAACAGTGACACCCATCACAGCGGAGGCAGTGACATTGAGATGGATGAGCAGATCATGAACAGCTCAAAGCGCGTGCAGCAGAGGCTCTCGGACACAGAGGAGTCAATGCAGGGCAGCTCTGACGAGACGGCAAACAGCGGAGAAGATGCCAGCAGTGGGCCTGGCAGCAGCAGTGGGCGCAGCGACGGCTCCAGCAATGAGGTGAACTCCAGTCACGCCAGCCAGTCGGCTGGGAGCCCCGGCAGTGAGGTTCATTCGGAGGACATGGCTGACAGTGAGGCCCtgaaggaggatgaggaggaggaggaggaggaggaagacgaggaggaggaggaggacacgGGGGCGGCAGAGAGGGGCTGCAGTCCTCAGAAGGAGGTCAGGAACCCTGAGCTGCGGAAGAGGAAGTCCGAGTCGCAGGCTGGCATCGGTCTGGGGGAGGCTCCGGGCCCTGCGGAGCGGCCGGGCAGCAGCAGCGGGACAGTCAAGGATCTCCCCTTCAACCCCGAGGCAGTGTCCTCCGTGGACAGCCGCATGAGGATCCTGGATGCCTGCTCCACACACCCGGAGGACCAGGATCATGACATGCAGGGGGAGATGGGCCCCGCACAAATGTCGCAGGGCCCCCAAGATCCCTGCCTCACGAGAACGGGAGACTTCCTGGGAGAGGCCATCGGCAGTGAGCTGTTCAACTGCAGGCGTTTCATTGGGCCCCagcaccaccatcaccaccaccaccaccaccatcaccaccaccaccaccaccacgagGGGTACATGTCTGTTCTGTCACCCTTCACCATGGGGGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200738 lncRNA upstream 116459 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 366277 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 367131 10969401 ~ 10971236 (+) False G159378
TU200649 lncRNA upstream 369966 10967334 ~ 10968401 (+) True G159377
TU200623 lncRNA upstream 494533 10841097 ~ 10843834 (+) True G159356
TU200801 lncRNA downstream 90247 11436662 ~ 11439612 (+) True G159483
TU200938 lncRNA downstream 279256 11625671 ~ 11647452 (+) True G159594
TU201143 lncRNA downstream 1330396 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 1439380 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 1453094 12799509 ~ 12810735 (+) True G159800
AMCG00001669 mRNA upstream 13226 11310570 ~ 11325141 (+) True AMCG00001669
AMCG00001664 mRNA upstream 50583 11281304 ~ 11287784 (+) True AMCG00001664
AMCG00001665 mRNA upstream 57879 11275284 ~ 11280488 (+) True AMCG00001665
AMCG00001663 mRNA upstream 295723 10992078 ~ 11042644 (+) True AMCG00001663
AMCG00001651 mRNA upstream 400448 10919255 ~ 10937919 (+) True AMCG00001651
AMCG00001678 mRNA downstream 144 11346559 ~ 11372681 (+) True AMCG00001678
AMCG00001677 mRNA downstream 38869 11385284 ~ 11396975 (+) True AMCG00001677
AMCG00001676 mRNA downstream 148651 11495066 ~ 11507509 (+) True AMCG00001676
AMCG00001674 mRNA downstream 266773 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001690 mRNA downstream 741790 12088205 ~ 12108319 (+) True AMCG00001690
TU200393 other upstream 1423703 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 3176552 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 3404812 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3591387 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3600477 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 983573 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 2923200 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 3985205 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4085922 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 4890847 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile