RNA id: AMCG00001686


Basic Information

Item Value
RNA id AMCG00001686
length 2973
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00001686
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12335024 ~ 12348395 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTTCATCCCCGACGCTTTTCCGCAGTGCTGTGGCATTGTCTGACAATGAAAGCCATCATCCAGAGGGTGTCTAAAGCCAGTGTGACAGttGGTGAGGAACAAATCAGTGCCATAGGCAAAGGTATTTGTGTGCTACTAGGGATATCAGTAGAAGATACTCAGAAGGATGTGGAATATATGGTTCGTAAGATTCTTAACTTGCGCTTGTTTGAGGATGAGAACGGGAAGCACTGGAGTAAAAGTGTGATGGATAAACAGTACGAGGTGCTGTGTGTGAGCCAGTTCACACTGCAGTGCATCCTAAAGGGGAACAAGCCGGACTATCACTCGGCCATGCCTGCTGAACACTCCCAGCCTTTCTACAACGACTTCCTAGAGCACATGAGGAAGGCCTACAAGCCCGAACTGATAAAAGATGGGAAGTTTGGAGCCTACATGCAAGTCCATATTCAGAACGACGGTCCTGTTACTATTGAGCTGGAATCCCCTGCTGGTCCCATCGACCCAAAGCAGCAGTCAAAGCTTGACAAACAGCAGCGCAAAGAGAAGATGCGAGCCAAGGGGCCCTCGGAGTCCAGCAAAGAAAAAGCCGCATCACGTTCCAAAGTGGACCCCAGCGCCAGCAGTGGAGCCGAGGGAGATGTCTCTTCGGAGCGGGAGCCGTAAACAGTGGAGTGATGCTGTTGTTTGGAATTGATGAACACCACAAAATCCCCAGAAGACTTGATCTTCATTGACCTCAAAACATCATCTTGGACACTGAGCACAGTGTCCCGGGGAACGAGCTCTCAAACTGACATTGACATTAAACCAAAGGACTCCACCGCCTTGTGTTTCTCTGAGAAGtccatttgaaataaaaaggtgggaactgaggggaaaaaaaactggaacaaaTTTGATCGTGGCAGGACAATGTTCCAACCTGCATTCATTTTGACCTGTGCTGTTCCATATAAACTTGTgcagaaaaaacattgttacacgtgaaatgtgtgtgttgaatGTTGAAGGCAGATTCTGATTTAAGATTACAATACAATCATTAAAAAGTAGTCATTTTGTAAAGTTCAACTGCCTATATTATCTACTGCCGCCTGCATGACTCACAAATATTAATTGCTGTATGTTCAGTCTGAAacaatctgaatacatttgaaatgtctaGAAGGACAGAATCTGCCCACCTGACCTTTTCCTACAGCTCTTTTCAGCATACCAGGAACATGGGGGGTAGGATAATAGGCTGTACATATAATAGCTGGAAATCAACTTTATATGTGACTTTAGGTTTTCCTACTAGAAAAGAGAAGAGGACCTAAGTTACATTcatcaatttaaattcaaaagtCTACCTGTGTATTGAATAGAATTTGCCTGTCTAttaatttgttgcattttgatAAACATAATATTTGCATCAGTTCTGAAGtctattcattgtttttaagtataaaatttaagttagaaaataaaatgctgcagaTTGTGTAGACCTTATCGAGATTAAGTAGGAAACCAGCAGATTCTCCTAATTCTTTAGGCTGAATTATTAGGAAGAGATGTAATTATTAgtatattatttcattatattaacAAAAGTACAGTGGCAAAATATCAAAGAAAGCTGTTCACTGTGTATTTAACAGTGTGGAGGTTCAGCCTTGGATCAGTGAGCCCTCGGTTGCACAAGAAGGTTCACTTTCCACTCTCATCTCGTGGCCAGAGAAATACTGTGCTGCTCTGCCTACTGCATACAGAGATATTGGTGTCTGCAGTTCTTTCCTGATGCACCAGTCCATTTAATCACACGTGTGTTTGATAGGATTGTGAGCAGGCCATGACATGCTTTGTAGGTTTCTCTGCTTAAATGAATCCCATCTTTTGTGAAGTGGGGGGTTATCATGTTGAGGGATATACATTGTTTGTTGTAGCTGTTGTATCATCTCGGTTCAATTCCTTATATGCAGTTGACCCATTTGCAGACACAGCTGTGCATTGGCTGATGTCCTTTGTGATGGTTGTATGGTTGGTCTTCACCACATAATTCTCTGTTTGGCATACCTGTTTCAACATAATTTCCCCTCTGCTTAATCCCAAATCTTCTCTGGCATGCATTCTAGAGCTCCACTTCTGTACAGAAATCTACATGGTGGTTGTGATATGGCAACCAATCACTGTTCTGTGCTGATATGTGGCCAACTCAAACAATGTCTCATACTGGCAGGAACTGGCTGACAGGATGAAGGTTGTCTATGGAATACCAAACATAGCAAATTACCTCTGCTACAATATCTTACCAGTAGACAGAGGTGTGTCCTATATAATTGTTAATATAGTCTATTTCAAAtcctgggaaaaaaataaagtggatACAACAGGGgatctgaagtttttttttccttttataaattaatctgtAATAAAGAGTCATGTTTTAAGAACACATGTTGCATTTACTCTTGAATATACCTCTGATAAAAGGCTACTCACAGCATCATTTAATGCATGTGGTTATGCAGTTAAATTTAACATCCATTTATTGCACTGGTGGCCAGTGCTGGTCCTAAAGAATCTCTAATTTCATTGGTCATCCTAAATAATTTGTTGAAAGCTTGGAGCACTTTATTGGTTTATCTAATTTTGAtattaattggttaatttaaGGGTGGAATGTGGGATCGGAAGGTTACAggcttttcacattttcaaattagatCTGGAGAAACTGGGTTTTTATCTAGtcataatgtttgttttttatgaccTATCTAAGAAGGTGTATCAGGTTGGGACCATCTGAATTCACTGAATAAGAGCTTTGccattaaagaaatgtaaaataagtacAGAATAATTTAACATCACAGAGCTATATTATCAAGGTGTACTGGCATGTACAAGGTAATCAAAAGGGCATTTTTAGAAAACTGGCATGTTGGAATGTTATAGATTTTGTGACATTGGTTGG

Function

GO:

id name namespace
GO:0019478 D-amino acid catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K07560 dtd, DTD; D-aminoacyl-tRNA deacylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 687572 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 895412 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1113116 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1362934 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1363788 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 328416 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 437400 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 451114 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1918993 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1957630 14306025 ~ 14306260 (+) True G160036
AMCG00001691 mRNA upstream 1324 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001693 mRNA upstream 5541 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001690 mRNA upstream 226705 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001674 mRNA upstream 719779 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001676 mRNA upstream 827515 11495066 ~ 11507509 (+) True AMCG00001676
AMCG00001692 mRNA downstream 77556 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001687 mRNA downstream 126793 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001688 mRNA downstream 159883 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001689 mRNA downstream 168617 12517012 ~ 12520705 (+) True AMCG00001689
AMCG00001695 mRNA downstream 173094 12521489 ~ 12526395 (+) True AMCG00001695
TU201065 other upstream 3576 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 2420360 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4173209 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4401469 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4588044 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1921220 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2983225 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 3083942 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3888867 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 4021018 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile