RNA id: AMCG00001688


Basic Information

Item Value
RNA id AMCG00001688
length 3572
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00001688
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12508278 ~ 12515505 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTTCCTGGTAAACAGCTGCTAGTGTCGGCGGGCTCCAGCTGTGCACCAAAAGTCGGTTTTTTTCACTGAATGAAGTGGttacatattgtttttgcaaaagAACATGATTTATTCTGGATCAGAAAGTGAGACGGACGACAATGAACACCCTTTGTTGCACAGGAAGCCGCTTGTCAAAGTTGAAAAGGCGCCAGTCTGCTGCTCATCCCGTTATGGCCTGGCCCTGCTGTCCTGCTATGGGTTTTTTGTGGCCTACGCACTGAGGGTCAACCTGAGCGTAGCCATGGTGGACATGCTGTCCAACAACGACAACGCCACCATTAACTCCAGCTCTCAGATCTGCCCTGCTCATGGAGGGTCCTTGCCACCTCTCCACAACAAGACGGCGAAGGTGTACGACTGGGACTCTGAAACTCAGGGCTGGATCCTGGGCTCTTTCTTCTACGGATACATTTTCACTCAGATTCCTGGAGGATACCTCGCCAGGAAATATGGAGCAAAGTGGTTCCTTGGAATTGGCATCCTGGGAACTGCCATATTTACGCTGCTTACCCCTCTGGCTGCTGATATGGGGGCAGGATACCTCATTGCGTTACGGGTTCTAGAGGGCATCGGTGAgGGAGTGACTTTTCCAGCAATGCACGCAATGTGGTCCGCGTGGGCTCCACCTTTGGAGAGAAGCAAACTCCTCACTATTTCATATACGGgtgCACAGCTGGGAACAGTAGTTTCACTTCCTATATCTGGATTAATTTGTTATCATCTGGACTGGAcctatgtgttttatatatttgGAGCAGTGGGGGTGTGCTGGTTCATATTGTGGATGTTGTTAGTCAGCAACACACCAGAGACGCACCAAAGAATATCTGTCAAAGAGAAGGAGTACATCACATCATCCTTAAAGAAAGAGTTATCTTCCTCATCTAAGCACATTCCCTGGAAGGCTATCCTGAAGTCTCTCCCACTATGGGCCATTGTTGTGGCCCATTTTTCTTACAACTGGACTTTTTACACTCTGCTTACATTACTGCCCACCTACATGAAAAATGTTCTCGGATTCAATATACAGCAGAATGGCTTTTTGTCTGCGCTGCCATATCTGGGCTGTTGGCTGCTGGCTCTTATGGGTGGACAGTTAGCGGATTACCTTAGAGAAACATTGCTGATTCCCACTGTGAAAGTCCGCAAATGTTTCAGTTTGATTGGAATGATTGGTCCGGCTGTGTTTCTGGTGTCTGCAGGGTATACAGGCTGTAATTATGTTTTGGCAGTGTCTTTTCTGAGCATCTCATCTGCTTTAGGAGGCATCTCTGCGTCAGGCTTTAGCATCAATCACCTGGATATTGCCCCATCTTATGCAGGAATTCTACTAGGAATCACCAACACATTTGCTACTATCCCTGGGATGGTGGGACCAGTAGTAGCAAGGGCCCTTACCCATTCTAACACTATTGAAGAGTGGCAAACTGTCTTCTACATTTCTGCTGCCATCAATGTTTTTGGTGCAGTGTTTTTTACAATCTTTGGTAAAGGAGTAGTGCAGGATTGGGCAGTTCCAGATCTCCATTCACATGGACACTAAGTTCTCTGACACCCAAGCCTGCAGACTGAAGCACTTGTACTGTAATCATGTGTCCCGGATGGACTGTTCTGCAGTGGGAATTGCTTTGCAGTCTTATATGGCCTTTCTCAATCCTGgctgcaaaaaatatttaattgtacatcTAATCCCATTTGAACAATATTACTCAGTCAGTGTTATATATCCCAGAATTGGGCATAGCTGACTGAAATGAAGACCTAGTTGGTTAAAAGTTGCCAATGTTGGAAGAATAGATTGTTCTATTTTTGTTGAAtccatttgcatttcttttactTATCATGTTTATGAATTATGTAActgtaattcagtttaatttcctcGTATAAATATGCCAGTCAAAAATCTCTGTAGAACAATGGTAAGTTTGTTGCACTGCGGTATTTTACAAAACACGTTTTGTAGTCAAGAAAGCACACGTGACTGCATGATTCTCCAAAATTAGACGAGCAATATTCCCTtagggttttaaaaatatatgaactgTTTTATATCAAtcttaaaacattaattgaagACACATTCACACTATTTTTAACTTAtagtatgtttgtatatgtgtgtgtaatatatatcaacacacagaggaaatgagggaataattacattttttgtgattCTCtggttattttcaaaatgatataGTGAGAATTGTTCTACTTATGATTGCCTTAAAACACAGCCCTatggtttatattttttgtattttgtaatctctgtctttcttttgtgtAATCTTAATCGTGGTGACAATTTCAATGTCACCATACTTAAACTCTCCAGATATAATCGGCAAATAAGGCACAAAAGAAGGGAAATACTTTATAAGAAGTCAGTCAAGGAAATGGAGATATCGTTAGAGGAATCTGATCGCCATTCCTAAAAGCTAGACGCGTAGAGAAATTGAATAGGTTTACTGTGTGATAAAGTATTAATAGGATCCTTACCTTGAGTCTTGAGTGGCCAAACAGTTAATCAAAATAGTCCTGGTTAAATCCATGTCCGTTACTTGGCTTCCATGGAGCGCTTTAGCCATGCATTTTTTGagcttttttaattcatttctgtTCTGGCAATTTCTTCCTTATCCAAAATGATCATAACTGAAACAATATTCTGTTCTGAAACTGTGACAATCtactttatttacacatttatttttctcaggtTCAACCTTCACTGTTTGCAAAAGATCATATATGGTCCCTACTTTTATTGGGGTGGGAACTGGTGGAATTGTAAAGGGACCTTTTCTTTATACCCATATGAAGCAAATCTATAAATGAATAACTGCTTTAGATATATCTTTCTTTGTTtacaattgtgtttgtttacaatcaGTGAGACCACTCATGGCATCTGAAAAAGGATCTAGTGAATCATATTACTTTGTTCAGTCTGTTACTTGGACCAATCTTCAGTTTGCTTAGTCATGTTAAGTGTAAAGTCAATTAAAACACTATTATAAAAATGCTGTTGGCATTTGTGTGTTTAGCAGGCTATTATATTGATAAATACACTGTTTCTTGACAACTTTCAACTACAGTATATGGTTATGGGATTATCTTTAAATTAGTaagcatttcaaatgttatttgtcttttttatataCCTAGAAATACTTGTGAAGTTGTTATGTTGTACTGTGTATGTTAATGAACCATTAACATTGTTGCATGTGAGAATAACACTACTCTGCCCTTCCTACAGGGTATCTAAGGACCTCAGTCTGAGTTATGTAATTTGTCTTAACCCATCCTCTAATCTAAAACAagtccaatgcattttacaaacacCTCCCTGCCAGAATGTCTATTAGCTCACTTAGGTCAATGTAATCCATTTACAATCCTAGCCCAGGCACTGAGAATAAAACAGGTCTTCACAAGTGCACCGAGCAAGGGAACAGCTCACAAGTTCCCAAACATTTCCATTCAAGTCTTCCACACATTGCAGGCACCACAAAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12301 SLC17A5; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 860826 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 1068666 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1286370 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1536188 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1537042 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 161306 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 270290 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 284004 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1751883 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1790520 14306025 ~ 14306260 (+) True G160036
AMCG00001687 mRNA upstream 5084 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001692 mRNA upstream 59094 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001686 mRNA upstream 159883 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001691 mRNA upstream 174578 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001693 mRNA upstream 178795 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001689 mRNA downstream 1507 12517012 ~ 12520705 (+) True AMCG00001689
AMCG00001695 mRNA downstream 5984 12521489 ~ 12526395 (+) True AMCG00001695
AMCG00001698 mRNA downstream 271577 12787082 ~ 12792831 (+) True AMCG00001698
AMCG00001699 mRNA downstream 328659 12844164 ~ 12852723 (+) True AMCG00001699
AMCG00001708 mRNA downstream 469394 12984899 ~ 13011789 (+) True AMCG00001708
TU201065 other upstream 176830 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 2593614 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4346463 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4574723 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4761298 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1754110 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2816115 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 2916832 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3721757 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 3853908 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile