RNA id: AMCG00001689


Basic Information

Item Value
RNA id AMCG00001689
length 1966
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00001689
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12517012 ~ 12520705 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAAGGAAAAGACTCACATCAACATCGTAGTGATCGGACATGTCGACTCCGGCAAGTCCACTACCACTGGTCACCTGATCTACAAATGTGGTGGCATCGACAAGAGGACCATTGAGAAGTTTGAGAAGGAAGCTGCAGAGatggGTAAGGGTTCATTCAAGTATGCCTGGGTTTTGGACAAGCTAAAAGCTGAACGTGAGCGTGGCATCACTATTGACATCTCCCTCTGGAAGTTTGAGACCAGCAAGTATTACGTTACCATTATTGATGCCCCTGGACACCGAGACTTCATAAAGAACATGATCACTGGCACTTCCCAGGCGGACTGCGCTGTCCTCATAGTTGCTGCGGGCGTGGGCGAATTTGAAGCTGGCATTTCCAAGAACGGCCAGACCCGCGAGCATGCCTTGCTCGCCTATACCTTAGGAGTCAAACAGTTGATTGTTGGCATTAACAAGATGGATTCCACTGAACCACCCTATAGCCAGAAAAGGTATGAAGAAATTGTCAAGGAAGTTAGCACATACATCAAGAAGATTGGTTACAACCCTGACACTGTGGCTTTTGTGCCCATCTCTGGGTGGAATGGTGACAACATGCTGGAGTCGAGCCCCAATATGACCTGGTTCAAAGGCTGGAAGATCACCCGCAAAGATGGCAATGCTTCGGGAACTACTCTGCTGGAGGCCCTCGATGCCATCCAGCCCCCAACTCGCCCGACTGACAAGCCCCTGCGTCTGCCCCTGCAGGACGTCTACAAAATCGGAGGTATCGGGACCGTGCCAGTGGGCCGCGTCGAGACGGGCGTCCTTAAACCCGGGATGGTCGTAACCTTTGCCCCCGTGAACGTCACCACTGAAGTCAAGTCTGTGGAGATGCATCACGAGGCCCTGTCTGAGGCGCTGCCTGGGGACAACGTGGGCTTCAATGTGAAGAACGTGTCTGTGAAGGACATCCGCCGTGGCAATGTGGCCGGAGACAGCAAGAATGACCCCCCGATGGAAGCGGCTAACTTCACTGCGCAGGTGATCATCCTAAACCATCCCGGGCAGATCAGCGCTGGCTATGCCCCCGTGCTGGACTGCCACACCGCGCACATCGCCTGCAAATTTGCTGAGCTGAAGGAGAAGATCGACCGCCGCTCCGGCAAGAAACTCGAAGACAACCCCAAGTCTCTGAAGTCTGGCGATGCTGCGATTGTTGACATGGTCCCGGGCAAACCAATGTGTGTGGAGAGCTTCTCTGACTATCCTCCTCTGGGGCGCTTCGCTGTGCGGGACATGAGGCAGACAGTGGCTGTGGGGGTCATCAAGGGTGTGGAGAAGAAGGCCTCCACCACGGGGAAGGTCACCAAGTCTGCCCAGAAAGCTCAGAAGGCAAAATGAATGCTGTGTTTAGCTGCCACCTCAGATGTACTCTATGGCAGATTGGTCTCCCAGTTCTTTATTTCAGTTGGTCATTTAAGTTTAATAGTCAAAGACTGGTTAATTATTACGATGCATCGTAAAAGTATCcgaaggaaaaaaactaaaatgttgtgTGGACCATCCGTTTTAATCTGTATTgtggcagttttatttatttttgtttagttttaaactgTACTTCTAAATGGAAACAGCACCATGACCAACAAATCTGTGCTTTTgagaccatttaaaataatacaatgtagtGTTCTCCTTACTGAGTGCACAGTTTAAGTCTTGACTTTTTGTCTAGctttagtgtttgtttgcaaATAGTAGGTACTTCTCTGCAGTTGACAATGACTACATTTTTACACAAACAGTTTGAAAGGTTCTGTTAttaagttaaagaaaaaaatatatataagttttCCCTTTATAGTTCAGAGCGCATGTATACATTGTGCACTTTGGTTAAACTAAGCTATCTGGCACTTTTGCACTCCTAAAATTTGATTGGCATTCGCTCCATGCaccttattcatttattgtg

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 869560 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 1077400 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1295104 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1544922 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1545776 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 156106 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 265090 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 278804 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1746683 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1785320 14306025 ~ 14306260 (+) True G160036
AMCG00001688 mRNA upstream 1507 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001687 mRNA upstream 13818 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001692 mRNA upstream 67828 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001686 mRNA upstream 168617 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001691 mRNA upstream 183312 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001695 mRNA downstream 784 12521489 ~ 12526395 (+) True AMCG00001695
AMCG00001698 mRNA downstream 266377 12787082 ~ 12792831 (+) True AMCG00001698
AMCG00001699 mRNA downstream 323459 12844164 ~ 12852723 (+) True AMCG00001699
AMCG00001708 mRNA downstream 464194 12984899 ~ 13011789 (+) True AMCG00001708
AMCG00001709 mRNA downstream 620392 13141097 ~ 13150256 (+) True AMCG00001709
TU201065 other upstream 185564 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 2602348 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4355197 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4583457 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4770032 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1748910 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2810915 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 2911632 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3716557 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 3848708 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000635 True 1427 mRNA 0.49 7 NC_007112.7 31113951 ~ 31129604 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_10939589_10944243.mRNA True 2041 mRNA 0.47 7 CI01000012 10938955 ~ 10944243 (-)