RNA id: AMCG00001690


Basic Information

Item Value
RNA id AMCG00001690
length 1714
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00001690
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12088205 ~ 12108319 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGTTTCGTATTCAAGAGGCGCTGACGCGGCGAGGGCGGGGCCAGCAATGCAGCCGCGGGAGTGTTGAGAGCTCAACTTTTGTAAAGCAGCTGACGCGGTAGAGGCAGAACTGCACAAGtactgtacaatgGCTGAGACGTCTTCACTGATAAAGCTGAGCCCACTGCTTCTGCCTCAGAACAAGGACAAGACTGTGTACGATGGGTTTATCACAGCTCAGgAAAAGGATTTCAGAATAAGAATCGTCTTGCCATCCGATCATCAGCTGAAACACGCAAGGCTGCAGTGCTGCTGGCAACTGAAGCAGATATTGCATGGATATCAACATATAATAAAACAGAGACTGCAGCATTCTTCGGATTTGCTGGGTTTTATGTTAGAGCTGAAAGCTGTTTTGGAACTGGCACtgaagaacaagcaggaatTACACGCAGCCCCCCCTCCACAGTACTACACACAGCTTATTAAAGAAATAGAATGCCTTGGATGGGATAAGCTTGTGTCCATTGACACAGAATTTAGCACTCTGAAGCTGAAGGCTGAAGACACTTCTGGTCGGGAACATCTGATTACAGTTAAATTAAAGGCCAAGCACCCAGCAGAACCCCCTGACTTCTCCGCTGACTTTCCAATCCCCCTGGTCATCGGCTGGACATGTCTGAGCTCTCTGATACACATTCACAGCCAGTTTCTGGCAGCGTTGGAGTCATTAAAGGAGTTTTGGGATGTAATGGATGAATTTGATGAGAAGACCTGGGTGCTTGAGCCAGAGAAGCCAACCAGAAGTGCCACAATGCGAAGAATTGCCATAGtTGTCACCCCCTTAAGGAATAAGTTGAATGCCAACATACACTTATGGAACCCAGAATGCAGTGTACTACAGAACATGAAGGACATTTTGGAAATCGAATTCCCCACAGCTGCCTCCCACGAAAAAGCtAATTTCAGTATGGAATGTGGCATTTGTTATTCATATCGACTTGATTCCGCCACACCAGATCAAGTGTGCAATGATCCACGATGTGGTCAGCCCTTCCATCAAGCCTGTCTATATGAGtggctCAGAGGGCTTCCCTCCAGTAGGCAGAGTTTTAACACCATCTTTGGAGAATGTCCATACTGTAGAAAGccaATTACAGTGAAAATGACTATGAAGAAACCCTGATGAGTCTATTTGTTCAATGGATCTTGACTGAAGATGAAATCAGTACTATGGATGAACACACAGTTATTTCCTAAGTGTTTGATTTGAAAttcaaacagcaaacaaaagaaagaaaatcaagaaCAGGAGTACACTTATTATACTGCTGTATAGTTTAACATGTGTAGGTATTGTGGATTCATTCCTGAATTCCTGTCTAGGCCGAGGTAGGACACAATCATCCCGGGTTGTTTCTTCCCTCTGTACATCATCAACCCATGTACTGCTTTGATTCTGTTCAGTGTCTTCTTTGGATTCCTTTATTCTATGGATCCTTTGGGCTGGTGAAACCTTTTTGTTCTGAAACAAAGCGTATTTGACAAGAACTTAGAGAAAGGTGTATGTTTTAACTAACTGCTCCTATAATTCAATGATCACTGGTAGAAAAAGCAAATCCCAAAGACGTTTTTGAAATGTTGTGTCCTTAAGATATGTTaacatagtttttaaatatgacaCAGAATTGTTAAAGCTGTACAATGTGTAAACCTGTGGTAATAAAGATTCA

Function

GO:

id name namespace
GO:0048599 oocyte development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10606 FANCL, PHF9; E3 ubiquitin-protein ligase FANCL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 440753 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 648593 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 866297 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1116115 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1116969 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 568492 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 677476 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 691190 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 2159069 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 2197706 14306025 ~ 14306260 (+) True G160036
AMCG00001674 mRNA upstream 472960 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001676 mRNA upstream 580696 11495066 ~ 11507509 (+) True AMCG00001676
AMCG00001677 mRNA upstream 691230 11385284 ~ 11396975 (+) True AMCG00001677
AMCG00001678 mRNA upstream 715524 11346559 ~ 11372681 (+) True AMCG00001678
AMCG00001679 mRNA upstream 741790 11338367 ~ 11346415 (+) True AMCG00001679
AMCG00001693 mRNA downstream 209526 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001691 mRNA downstream 221660 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001686 mRNA downstream 226705 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001692 mRNA downstream 317632 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001687 mRNA downstream 366869 12475188 ~ 12503194 (+) True AMCG00001687
TU200393 other upstream 2173541 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 3926390 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4154650 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4341225 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 4350315 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 221669 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 2161296 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 3223301 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 3324018 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 4128943 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile