RNA id: AMCG00001691



Basic Information


Item Value
RNA id AMCG00001691
length 1265
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00001691
representative False

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12329979 ~ 12333700 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGATAGCCAATCAGAAAGTGTTTCTTTTCAACATGGCCGCGCCCTTGAACCGATCCGGTGTGCGGGGCTCACTTTCCGTCTTCAAACAATAGCACAGAGCTTGCATTTCTTCAGTAAATTTGCGACAGACCTCTGACATACGCGCAAAGCGGACGCCATCTCGATGCGCAATGACCCTGCGGGACGTGGTGAAGTGGAACAGGCGGGTGTCGCTGCTGTACGCCGTGGGCATCTGGACGATGTTCGGCACTTACGGGTATTTCCAGATCAGGTCGAAGTGGAGTAAAAAGGACGATGAAGAACACATTAACGAGACACCACCTGTAGAACAAGAACTTGCAGATGAATATATACCTGAACCAACAGCGAATGAAAGCAAAGCACAGGGACTACGTGTAAAATCAACAGTCACCTACAGGGACAATTTCATCCCCTATTCGTCGAGAATCTGCAGCTATCTGCAGTCCCTGCGCAGCAGCTCCGAGGATACTTTTGAAGAGCGATCGTATGTCGCCACCCGGTGGATGACGACCAATGTGGAGGGGAGCTACATGAGTGCAGTTTTTCAAGGTTTTATGCGGCTCTTCAATTACATCGATGGAAACAATGaagcagGGGAAAAGATTCCTATGACAGCCCCTGTTGCCGTTGAGATGCATCCTTCTGGCGGCAAAACGGGCATAAGCAACATCTCTATATCTTTCTTCGTCCCAGCAAAAGGCAACCCTCCTAAAGCAAAAGATCCCACCATTTATGCATCGAATCGCCCAGCAGGCGTAGTGTATGTTCGGTCTTTTGATGGTTTTGCGATGGAATCGGACTGGAATGAAAATGCCCAAGCCCTGAAGGATGACCTGCAGGCTGCTGGCATTTCCTTCAATCCGCTCAGTCTCATAGCAGCTGGCTATGACCCCCCATTCAGGTTCATAAACCGACACAATGAAATCTGGTTGTATGGACcctgaggggagagaggggaggtgcCTGCAAGTGCTTCTGAGCTTACTAAAACTTGACTAAAGAATGTAACCTATCAGTAAATAAATTGTGCCTTTCCTTCCCCAAACAAAACTGGACTTTTGATTAAACTTTGGAAAATGCGCCTAAATGCATTGCTTCTTGCAGGTTGAAATTGAACAGGATACATTTGTGCATGTTCTAATGTGTGTATGATAACCTgctgtaattgtatgtatttgtggatgttttttcctaggcattttgtttgtgggtatgtaacaaaataaaaccactttgagaaacta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 682527 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 890367 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1108071 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1357889 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1358743 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 343111 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 452095 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 465809 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1933688 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1972325 14306025 ~ 14306260 (+) True G160036
AMCG00001693 mRNA upstream 496 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001690 mRNA upstream 221660 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001674 mRNA upstream 714734 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001676 mRNA upstream 822470 11495066 ~ 11507509 (+) True AMCG00001676
AMCG00001677 mRNA upstream 933004 11385284 ~ 11396975 (+) True AMCG00001677
AMCG00001686 mRNA downstream 1324 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001692 mRNA downstream 92251 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001687 mRNA downstream 141488 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001688 mRNA downstream 174578 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001689 mRNA downstream 183312 12517012 ~ 12520705 (+) True AMCG00001689
TU200393 other upstream 2415315 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4168164 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4396424 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4582999 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 4592089 7736515 ~ 7737890 (+) True G158672
TU201467 other downstream 1935915 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2997920 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 3098637 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3903562 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 4035713 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile