RNA id: AMCG00001692


Basic Information

Item Value
RNA id AMCG00001692
length 1667
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00001692
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12425951 ~ 12449184 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTCATGAATTCCCCACGGACCTTTTCACGCACAAGGATAGACAGGAGGGTGCCATTGCTCTGCATGTCATGTGTGCGATGTACATGTTCTATGCCCTGGCCCTTGTTTGTGATGACTACTTTGTTCCCTCCCTGGAGAAAATTTGTTTACGTCTGCACCTCAGTGAAGATGTGGCAGGGGCAACCTTCATGGCGGCAGGAAGTTCAGCTCCTGAACTTTTTACATCAGTCATTGGAGTGTTTATTACCAAGGGAGATGTGGGTGTTGGGACTATTGTTGGATCTGCAGTATTTAATATCCTCTGTATAATTGGAGTCTGTGGGATTTTTGCTGGGCAGGCCGTCCACCTGTCCTGTTGGACTCTTCTCAGGGACTCTGCGTTCTATACCCTATCAGTGGCCGCGCTCATCGTGtttattCATGATGAAAAGGTTTCCTGGTGGGagtcattaattttaatatcgATGTACTTGGTGTACATTATGATCATGAAgtttaACTCCACGGCACAGCGTTACTTTGATAGAAGGAAGAAGGGTGCAATAAATTTGGCCAATGGAACAGCAAATAATACAGACATGGATGATAACAGCAACTGTGACGCTACTGTAGTGCTACTAAAGAAAGCAAACTTCCATCGCAAGACCTCCGTGCTGATGGTGGACGAGCTGCTGTCCGCATACCCTCACCAGCTCTCCTTCTCTGAGGCCGGCCTGCGAATCATGATCACCAACCACTTCCCTCCGCGCACCAGGCTCACCATGGCCAGCCGAATGCTAATCACTGAGAGGCAGCGGCTGATCAACAACAAGACTTTCAGCAACGGTGACTCTGACGTGGCCATCAGGATCCCCAATAAACATGGTATCGAGAACGGGCTAGGCCTGGGCACCTCCTCCGACAGGGGCATGAACGGCCGCCACGGCGAAGACGATGGGATGGAGACCGGCAACGAGACCGAGAACGAGAATGAGGACAACGAGAACAATGAGAAtgatgaagaggaagaggatgatgatgaaaatgaagGGCCCCTTGTGCCCTTTAACCCCCCAGCTGGTGTGTGTAACAAGATTAAGTGGCTTTTGGCTTGGCCACTCTGTCTTCTGCTCTATTTCACCATCCCCAACTGTGGATTGCCCCGGTGGGAGAAGTGGTTTATGGTCACGTTCATAACCTCTACCATGTGGATTGCATGCTTCTCCTACGTTATGGTCTGGATGgTGACTGTAATTGGATTCACTCTGGGAATCCCAGATGTGATCATGGGTATAACCTTTCTGGCAGCAGGGACCAGTGTACCAGACTGCATGGCCAGTCTCATTGTGGCACGGCAAGGCTTGGGGGATATGGCAGTCTCAAACTCCATTGGCAGCAACGTGTTTGACATTTTAGTAGGACTTGGACTTCCATGGACATTGCAGACATTGGCCATTGATTAtggttcatataTTCATCTGAACAGCAAAGGACTCATTTTTTCTGTTGGACTGTTGTTAGCTTCAGTTTTTCTCACAGTTCTGGGTGTCCATCTGAACAAATGGGTGTTGGATAAGAAACTGGGGTTTGTGTGCCTTTTTCTGTACGCCATTTTCCTGTGTTTCTCCATCATGATCGAGTTCAATGTCTTCACGTTTGTCAACCTACCGATGTGCCGGGATCTC

Function

GO: NA

KEGG:

id description
K13751 SLC24A3, NCKX3; solute carrier family 24 (sodium/potassium/calcium exchanger), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 778499 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 986339 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1204043 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1453861 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1454715 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 227627 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 336611 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 350325 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1818204 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1856841 14306025 ~ 14306260 (+) True G160036
AMCG00001686 mRNA upstream 77556 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001691 mRNA upstream 92251 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001693 mRNA upstream 96468 12317845 ~ 12329483 (+) True AMCG00001693
AMCG00001690 mRNA upstream 317632 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001674 mRNA upstream 810706 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001687 mRNA downstream 26004 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001688 mRNA downstream 59094 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001689 mRNA downstream 67828 12517012 ~ 12520705 (+) True AMCG00001689
AMCG00001695 mRNA downstream 72305 12521489 ~ 12526395 (+) True AMCG00001695
AMCG00001698 mRNA downstream 337898 12787082 ~ 12792831 (+) True AMCG00001698
TU201065 other upstream 94503 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 2511287 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4264136 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4492396 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4678971 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1820431 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2882436 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 2983153 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3788078 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 3920229 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile