RNA id: AMCG00001693


Basic Information

Item Value
RNA id AMCG00001693
length 3537
RNA type mRNA
GC content 0.46
exon number 21
gene id AMCG00001693
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12317845 ~ 12329483 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattgatttaatatttatgtaatgtttataGACAATTACTGAATGAAAGAATGATTGACAGGTTTTTGTAACTGAAATCCTATCTTTCTTTATGGAGAATGTGTGAGCAATAGATGTTGTGgtcattacattatatttcagtAGAGACTACGCAGGTACACGTAGGTATGGGCGTGCCAAAAAAGCAAGATAAAACAAGCTGGTAAACCGGTAGCAGCAGTGTTTTCAAGTGCGCACTTCTCTTAAAAACCTCTTTATTTCACTGGATAAAGATTAATAAGGGAACATGACATTCTTGTGGTACTGTGTCTGTGGACTGTTTTTCTTCACAACTGTGAAGGCTACCAAGGGGCTTGTAGGAGGCATTGAAGAGATTCCTGTGAATAACTCTGGAGTACTTAGGAGTGCCCAGTTTGCTCTGGATAAGTATAATAATGCAAGCAATGATatgttcattaataaaataactcaaattttcaatgcaaaactgcaggTGGTTAGTGGGATTATGTACCAGTTTGGTGCTAAAATAGGACGCACAGACTGCATGAAAAGAAATTTCCCTAATGCAGAGTCATGTCCTTCAGCCCCAAGTCACGatcagCAGAATGAGGACCGGGACGGGGTGCGCTTCAGCTGGAACGTCTGGCCCTCGAGCCGACTGGAGGCCACAAGGATGGTGGTGCCCCTGTCCTGCCTCTTCACCCCCTTGAAGGAGCGCCTGGACCTCCCTCCAGTGCAGTACGAACCCGTACTCTGCAGCCGGCCCAACTGCAAAGCTGTGCTCAACCCCCTCTGtCAAGTTGATTACAGAGCCAAACTATGGGCGTGCAACTTTTGTTTCCAAAGAAACCCATTCCCCCCCACATATGCAGGCATATCAGAAGTCAACCAACCAGCTGAACTAATGGCACAGTTCTCTACAATTGAATATATTGTACAGcgTGGACCCCAGACCCCTCTGATCTTCCTGTATGTGGTGGACACATGTCTGGAAGAGGAGGACCTTCAGGCGTTGAAGGAGTCCTTGCAGATGTCCCTGAGTCTCCTCCCTCCTGACGCACTGGTTGGCCTGATCACATTTGGCAGGATGGTCCAGGTGCATGAGCTGAGCTGTGAAGGCATCTCCAAGAGCTACGTCTTCAGGGGGACCAAGGATCTGTCAGCTAAACAAATCCAGgAAATGTTGGGTCTGATGAAGCCTGCAGCCCCAGTACAACAAGGGAGACCTGCTCCACCTCAGGAAACGTCCACCTCCAGCAGGTTTTTGCAGCCTGTGCATAAGATTGATATGAACCTGACTGACCTCCTTGGGGAGCTTCAGAGGGACCCCTGGCCTGTCCCTCAGGGGAAGAGACCCCTCAGATCTACTGGTATCGCCCTGTCCATTGCTGTGGGGCTCCTGGAGGGTACTTTCCCCAACACCGGGGCTCGAGTGATGCTCTTCACGGGCGGCCCACCAACGCAAGGCCCAGGGATGGTTGTGGGCGATGAGCTGAAAACCCCTATCCGCTCCTGGCACGACATTGAGAAGGACAACGCTCGCCACCTGAAGAAAGCAACCAAGTACTATGAAGCTTTGGCCAACCGTGCAGCTGTTAACAGTCACTGTATTGACATCTATGCCTGTGCTCTGGACCAGACTGGTCTTCTGGAAATGAAGTGTTGTTCAAACCTTACAGGGGGTTACATTGTAATGGGGGATTCCTTCAATACTTCTCTGTTCAAGCAGACATTCCAGAGAGTCTTTAGTAAAGATTACAACGGGGAATTCCGCATGGCTTTTGGAGGAACATTGGAAGTCAAGACTTCAAGGGAGCTGAAGGTTTCTGGAGCCATTGGTCCGTGTGTCTCTCTTAACGTAAAGGGGCCGTGTGTGTCAGAAAATGAAATGGGAGTTGGTGGGACAAACCAGTGGAAGGTGTGCAGTCTTAACCCCTCCACCACACTCGCAGTCTATTTCGAAGTTGTGAATCAGcACAATGCGCCAATTCCTCAGGGAGGTCGAGGAGCCATTCAGTTTGTCACGCAGTACCAACATTCGAGCACACAGAGGCGGGTCAGAGTGACAACGGTTGCTAGGAACTGGGCCGATGCACAGTCTCAGATCCAGCACATAGAAGCGTCCTTTGACCAGGAGGCGTCGGCTGTTTTGATGGCACGCCTGGGTGTGTTCAGAGCCGAATCTGAAGAGGGGCCCGATGTGCTGAGATGGCTGGACAGGCAATTGATCAGGCTGtgtcAGAAGTTCGGACAATTCAATAAAGACGACCCAACCTCTTTCAGGCTGTCGGAGTCCTTTTCTCTTTACCCACAGTTCATGTTCCATTTGCGGAGATCACCTTTCCTTCAGGTGTTCAACAACAGCCCTGATGAGTCCTCGTATTATCGCCACCATTTCGTGCGACAGGACCTGACCCAGTCGCTCATCATGATCCAGCCTATCCTGTATTCCTACTCCTTCTATGGACCTCCAGAGACCATTGCACAGTGGCGCAAAGCGGGATACCAAGAGATGGCTGAGTACGAGAACTTCAAACAGCTCCTCCAGGCTCCTTTGGATGACGCCCAGGAGATCCTGCAGACGCGCTTCCCAATGCCCCGCTATGTTGACACCGAGCACGGAGGCAGCCAGGCTCGGTTTCTTCTGTCAAAGGTGAACCCATCTCAGACGCATAACAACTTGTATGCATGGGGACAGGAATCTGGGGCCCCCATTCTGACCGATGACGTGAGCTTGCAGGTGTTTATGGATCACTTGAAGAAACTTGCCGTTTCTAGTGCGTCATGATCGTGTTAAAGCACCCGTCTGAAGGATTCTTCGGGAAAGCTATCCATCTCTATTGGACCTATTGACATTTCAAATCCttacaatatttaaactttaaagtaTTCGTTTTGCTTTTGTATATGTACTTCTGTCATGAAGCATACTGTAGAGATAGAGGTTTTAATGGGATGATGAAACATCAGGCTTCAGAAGTTCAGAAAAGGTCAAACATTTTTACAGTCACCATTCCTTTTATAATTCCTTTTGTATCTTATTTCTGGAAAGGAATGACCAATTAACTTTTGTAAACCTGTAGTTTACATTTTGGTATTGTACCTGTAATAACTGTCCAATGATTATTGCACACTGATATGACTGTTTTTGCAAAGCAAGCTGTAAGAAAATGTTCTTATGAATGGAATACTTCTTATTAAgcttattttctgaatatttagAAACTTTAAGGCTGTAATTTCCATGAAGAACATGGATATGATAACCTCGAATTTTAAGTCATGTGCATTGTTAAAAAAACTGATGCATTTCCTCATCATGCAGAATTAgcatgcaaatgcaaaatatagtATATGATTAATGCATTCCATTGATCTAATAAGTCTTTAGTTTGTATAGATTTAGGAAGCATTGTAGTAATTCTAagtgtatgtataaatgtatgtttcacctgtttatattgtataaaaaatgaTCTCAGAATTTAATGTCTTAATTCCTGCTTCACCATTAAactgataaaatacaaacaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048821 erythrocyte development biological_process
GO:0051216 cartilage development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14006 SEC23; protein transport protein SEC23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 670393 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 878233 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1095937 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1345755 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1346609 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 347328 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 456312 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 470026 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1937905 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1976542 14306025 ~ 14306260 (+) True G160036
AMCG00001690 mRNA upstream 209526 12088205 ~ 12108319 (+) True AMCG00001690
AMCG00001674 mRNA upstream 702600 11613188 ~ 11615245 (+) True AMCG00001674
AMCG00001676 mRNA upstream 810336 11495066 ~ 11507509 (+) True AMCG00001676
AMCG00001677 mRNA upstream 920870 11385284 ~ 11396975 (+) True AMCG00001677
AMCG00001678 mRNA upstream 945164 11346559 ~ 11372681 (+) True AMCG00001678
AMCG00001691 mRNA downstream 496 12329979 ~ 12333700 (+) False AMCG00001691
AMCG00001686 mRNA downstream 5541 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001692 mRNA downstream 96468 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001687 mRNA downstream 145705 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001688 mRNA downstream 178795 12508278 ~ 12515505 (+) True AMCG00001688
TU200393 other upstream 2403181 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4156030 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4384290 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4570865 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 4579955 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 505 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 1940132 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 3002137 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 3102854 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3907779 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile