RNA id: AMCG00001695


Basic Information

Item Value
RNA id AMCG00001695
length 1694
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00001695
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12521489 ~ 12526395 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGTGTACATAGTTAAACCTTCATGGAGTTTGGAAACAACTTTAGTCTCCCTGGAGAAGGATATCCACGGAGAAATAATAATCACGTTTGCATTACAAATGtctacacacaaatacatttcaaatagcaGTCTTGCCCTGTACTGCCGCGTTGCTCTGCCCACTACGATGAACGGGAACCCGGCAGCTGCTGTCCGGAGGAGAGCCAGGAACCAGGAGCCAGCGAGAAGCCCGAATGCAGCCAGGAAAGCTCCGGTATGCCGAAGAGGAAGAAGCCCCAGAGCTGCGGACAATGACAAGGGTAAAGCGGCATGCCCTACACGTGGGAAGGTCCCAGCCTGTCACAAGCCCTGTGGGCCATTACCCGCGCCGGACCGGGTCAAAGCGGCGAGCCCTCAGCGCCCCGCCGCGGCCGCCAGAGCCAGGGCTCCTGCCAAGATTAAAGCAGGAAAAGGCGCTCCACACAGTCCCGAGAGGGTCCTGCAGTCGACGCTTGAGAGTTTAAAGATCAGGAAAAAAGCCAGGGGGGACGTGGCCGGTGAAGTGAACAAAATCGTGGAAGGGatcataaagcatttaaaaacgAAATCAGACTGCTTCAGTGAAATCGAGAAACTGCCCACTGGAAGCTACTACGAGAATGTGAAGATCTCTGAACCAAATGAGTTTGACGTGATGCTGACAGTGCCGGTCCAAAGAGTTGAGCTCCAGGAGTTTGATTCGGAGGGGGCTTTCTACAGTGTATCATTCAAAAGAAACCCCCAAAAGCGCCCGCTGGATCGCTTTGTCCTGAACGACAGGACCATCTCTGCCAACAAGATGCTCAAGGACTTCAGGAATCACATCAAACAAGCCACTGCATCAGTGAGCAGTGTAAAACTGGAAAGGAAGAAAGCAGGATGTCCTGCAGTGACCTTATTAATGAAAGTTAAAGGTCGAGAGGTGGGTTTGGACATCGTGTTGGGTCTTAAGGTCCACGCACAGAGCTGGCCCACGATCACCAAGGATGGCTTCAACATCGACGGCTGGCTGGGCACCAAAGTGAAACAAGAGTTCAAGAGATGCCCCTTCTACCTGGTGCCAAAATATGTTGGCAAGGGCACTGATGAAAAACACGGAGTCTGTGCAAAAGATACATGGCGGATTTCATTCTCGCACGTGGAAAAGGGCATCTTGAAGAATCATGGATTTGCCAAGACTTGTTGTGAATCTGGAGGCTCACAATGTTGCAGGAAACAGTGTCTAAAACTCCTTAAATGTTTACTACAaaaactgaaagagaaacatCCAGAACTGGCAAAGTTTTTCTCCTATCAAGCAAAGACCGCCCTTCTCCATGCTTGTGTGAAGAGACCACAGGACAGCGACTGGGAGATCAAGGAACTCGATGACTGTTTTCAACAGTTCCTTGACGATTTCATCCAGTATCTGAAAGCTGGGGATCTCCCTCACTTTTTTATCCCAACTTACAATCTTTTATATTCTACAACTAAATCACACCGACAGTTTCTGATCAAGTGTATTGAAGAACAACGAAACAACAGGTTTCCAGTTTTCAGGAACTGAAATTAAACCGATCCTATATGGAAAGGACGAATCAATTTTTATATTGAACAGATGTGAAGTTATGCAATATTCAATTGcacaatattatattacaatgtgcttattttacatttgtcttaAAGTGCTG

Function

GO: NA

KEGG:

id description
K17834 MB21D1; cyclic GMP-AMP synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200938 lncRNA upstream 874037 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 1081877 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1299581 11217319 ~ 11221908 (+) True G159441
TU200653 lncRNA upstream 1549399 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 1550253 10969401 ~ 10971236 (+) False G159378
TU201143 lncRNA downstream 150416 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 259400 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 273114 12799509 ~ 12810735 (+) True G159800
TU201465 lncRNA downstream 1740993 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1779630 14306025 ~ 14306260 (+) True G160036
AMCG00001689 mRNA upstream 784 12517012 ~ 12520705 (+) True AMCG00001689
AMCG00001688 mRNA upstream 5984 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001687 mRNA upstream 18295 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001692 mRNA upstream 72305 12425951 ~ 12449184 (+) True AMCG00001692
AMCG00001686 mRNA upstream 173094 12335024 ~ 12348395 (+) True AMCG00001686
AMCG00001698 mRNA downstream 260687 12787082 ~ 12792831 (+) True AMCG00001698
AMCG00001699 mRNA downstream 317769 12844164 ~ 12852723 (+) True AMCG00001699
AMCG00001708 mRNA downstream 458504 12984899 ~ 13011789 (+) True AMCG00001708
AMCG00001709 mRNA downstream 614702 13141097 ~ 13150256 (+) True AMCG00001709
AMCG00001718 mRNA downstream 1065796 13592191 ~ 13602628 (+) True AMCG00001718
TU201065 other upstream 190041 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 2606825 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4359674 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4587934 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 4774509 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1743220 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2805225 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 2905942 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3710867 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 3843018 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile