RNA id: AMCG00001699


Basic Information

Item Value
RNA id AMCG00001699
length 915
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00001699
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12844164 ~ 12852723 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAATCACTTTTCTACAGCCGCTTCTTCATACTTCTGCCCTGGGTTTTGATCGTCATCATCATGATCGATATCGACACCAAGAGGACGTCCGGCAGAAGCCCTGCGCATCTCTACGTCTCCAGACTCGGGCATACCCAACGCATGGATAGGACACCCCGGGTCAGCAGCAACCGCTCCGCCGCGCCCGTCATCTACGCCATCACCCCCACTTACAGCCGGGCGGTGCAGAAAGCCGAGCTGACCCGCCTGGCCAACACTTTCCGCCAggtgccccatttccactggctgCTGGTGGAGGACTCGCACAGCCGCACCGAGCTGGTGTCCCGCTTCCTGGCCCGCTCCGGGCTGCCCCACACGCACCTGCACGTCCCCACGCCGCGGCGCTACAAGCGGGCCGGCCTGCCGCGGGCCACCGAGCAGAGGAACGCGGGGCTCGGCTGGCTCCGGCAGCACCGCGCCCCCAGAGACGCCGGGGTGGTGTTTTTCGCGGATGATGATAACACTTACAGCCTGGAGCTTTTCGAAGAGATGCGGTCGACACGCACGGTCTCCGTTTGGCCAGTTGGGCTGGTGGGCGGCCGGCGGTACGAGCGCCCCGTAGTGGACAAAGGCAGAGTGGTGGGCTGGTACACCGGCTGGAGAGCAGACCGCCCGTTTGCTATTGACATGGCAGGTTTTGCTGTAAGTCTTCAAGTGATCCTGGCCAACCCCAAAGCAGTGTTCAAGCGCCGGGGATCCCAGCCAGGAATGCAGGAGTCCGACTTCCTAAAACAGATCACGAAAGTGGAAGACCTTGAACCGAAAGCACAGAATTGTACTCGGGTCCTGGTTTGGCACACTCGGACCGAGAAAGTGAACCTAGGGAACGAGCCGAAACATCGCCAAGACACCGTTCAGATCGAGGTATAA

Function

GO: NA

KEGG:

id description
K10157 B3GAT2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201187 lncRNA upstream 33429 12799509 ~ 12810735 (+) True G159800
TU201143 lncRNA upstream 164675 12676811 ~ 12679489 (+) True G159775
TU200938 lncRNA upstream 1196712 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 1404552 11436662 ~ 11439612 (+) True G159483
TU200738 lncRNA upstream 1622256 11217319 ~ 11221908 (+) True G159441
TU201465 lncRNA downstream 1414665 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 1453302 14306025 ~ 14306260 (+) True G160036
TU201556 lncRNA downstream 1673014 14525737 ~ 14526508 (+) True G160107
TU201569 lncRNA downstream 1706043 14558766 ~ 14563369 (+) False G160116
TU201568 lncRNA downstream 1710131 14562854 ~ 14563369 (+) True G160116
AMCG00001698 mRNA upstream 51333 12787082 ~ 12792831 (+) True AMCG00001698
AMCG00001695 mRNA upstream 317769 12521489 ~ 12526395 (+) True AMCG00001695
AMCG00001689 mRNA upstream 323459 12517012 ~ 12520705 (+) True AMCG00001689
AMCG00001688 mRNA upstream 328659 12508278 ~ 12515505 (+) True AMCG00001688
AMCG00001687 mRNA upstream 340970 12475188 ~ 12503194 (+) True AMCG00001687
AMCG00001708 mRNA downstream 132176 12984899 ~ 13011789 (+) True AMCG00001708
AMCG00001709 mRNA downstream 288374 13141097 ~ 13150256 (+) True AMCG00001709
AMCG00001718 mRNA downstream 739468 13592191 ~ 13602628 (+) True AMCG00001718
AMCG00001717 mRNA downstream 765571 13618294 ~ 13661682 (+) True AMCG00001717
AMCG00001723 mRNA downstream 809058 13661781 ~ 13667350 (+) True AMCG00001723
TU201065 other upstream 512716 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 2929500 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 4682349 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 4910609 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 5097184 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 1416892 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 2478897 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 2579614 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 3384539 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 3516690 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011889 True 1674 mRNA 0.50 4 NC_007124.7 27951688 ~ 28009574 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_10639383_10640319.mRNA True 1474 mRNA 0.49 2 CI01000012 10639161 ~ 10640848 (-)