RNA id: TU201247


Basic Information

Item Value
RNA id TU201247
length 266
lncRNA type sense_over
GC content 0.60
exon number 6
gene id AMCG00001710
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 12995637 ~ 13105424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGCAGACCGAGGTCACCTTTTGCTccACGGGGTCCTGGGAATCCGGGGCCGCCTGGGGGACCCTGCTCGCCTCTCTCACCTGGCCCACCTATTGGTCCGATCGGTCCTACTTCTCCTTGCTCTCCTCGCTCTCCAGTTTTACCCGAAGATCCCATTGTTCCAGTTAAACCAGGGTCACCAGAACTACCCTTCTCACCAGCAACTCCTTTCGGGCCATAACTACCAGGCAAGCCAGGAAGCCCCTGCAGGCCTACTTCTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201238 lncRNA downstream 50360 12946451 ~ 12947048 (-) False AMCG00001704
TU201236 lncRNA downstream 51572 12942361 ~ 12945836 (-) False AMCG00001704
TU201208 lncRNA downstream 203847 12787082 ~ 12793561 (-) True G159818
TU201108 lncRNA downstream 482330 12513392 ~ 12515078 (-) True G159748
TU201107 lncRNA downstream 484504 12512352 ~ 12512904 (-) True G159747
TU201311 lncRNA upstream 749616 13750880 ~ 13751089 (-) True G159904
TU201434 lncRNA upstream 1174477 14175741 ~ 14203768 (-) True G159995
TU201466 lncRNA upstream 1266123 14267387 ~ 14267741 (-) True G160025
TU201482 lncRNA upstream 1309877 14311141 ~ 14316143 (-) True G160040
TU201527 lncRNA upstream 1419673 14420937 ~ 14517285 (-) True G160080
AMCG00001704 mRNA downstream 20382 12943258 ~ 12977026 (-) True AMCG00001704
AMCG00001702 mRNA downstream 60165 12931426 ~ 12937243 (-) True AMCG00001702
AMCG00001705 mRNA downstream 95385 12900485 ~ 12902023 (-) True AMCG00001705
AMCG00001703 mRNA downstream 126647 12854099 ~ 12870761 (-) True AMCG00001703
AMCG00001700 mRNA downstream 165074 12825577 ~ 12832334 (-) True AMCG00001700
AMCG00001707 mRNA upstream 188861 13190125 ~ 13191677 (-) True AMCG00001707
AMCG00001706 mRNA upstream 190500 13191764 ~ 13206374 (-) True AMCG00001706
AMCG00001712 mRNA upstream 223152 13224416 ~ 13227590 (-) True AMCG00001712
AMCG00001711 mRNA upstream 237242 13238506 ~ 13272755 (-) True AMCG00001711
AMCG00001713 mRNA upstream 322634 13323898 ~ 13325020 (-) True AMCG00001713
TU201233 other downstream 63740 12931231 ~ 12933668 (-) False AMCG00001702
TU200551 other downstream 2326167 10670437 ~ 10671241 (-) True G159303
TU200475 other downstream 2775690 10221169 ~ 10221718 (-) False AMCG00001628
TU200134 other downstream 4457150 8514367 ~ 8540258 (-) True G158971
TU199737 other downstream 5332836 7662091 ~ 7664572 (-) True AMCG00001554
TU201414 other upstream 1146364 14147628 ~ 14151555 (-) True G159976
TU201592 other upstream 1549425 14550689 ~ 14551764 (-) False AMCG00001756
TU201593 other upstream 1549425 14550689 ~ 14566917 (-) False AMCG00001756
TU201595 other upstream 1549425 14550689 ~ 14566917 (-) False AMCG00001756
TU201596 other upstream 1555568 14556832 ~ 14570927 (-) True AMCG00001756

Expression Profile