RNA id: AMCG00001717


Basic Information

Item Value
RNA id AMCG00001717
length 2346
RNA type mRNA
GC content 0.47
exon number 17
gene id AMCG00001717
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 13618294 ~ 13661682 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGTGGGCATTTCTGTGAGATAAATGTAAATGAGTGCGACTCAGAGCCCTGTCAGAATGGCGCAGTGTGTTTGGATGATGCCAACCGATACCTTTGCTTTTGCCCAGAAGTAAATTATTGCACTAATGTTTATGATGACAACACAGAAATCTTGATTAAAGTTTGTTATACTGACCCATCCTGTTTCTGGTTGTTGATGGGATGTTTTTCTCCCCGAAACGTAGGCTTCGAGGGCCTCAACTGTGAAATTAACTTTAATGAATGTGATTATGGATTCTGCACAAACAACTCAACTTGTATTGACCTAGTTGCTGACTATAAATGTATTTGCCCCATGGGCTTTACCGATAAAAACTGCTCAACTGAGATAAACGGATGTGCTGAGCCATGCCCAAACGGGGGCATGTGTTACAGTCTGCTTGGAGAGTATCGTTGTGTCTGTGCACCAGGATCTGAAGGTGATGACTGCTCTGTACCAGTGAATGAATGCATCTCAAATCCGTGTGACCCTAGAGGAAACCTCTACTGTGAAGATCTTGTGAATGGCTTTAAATGTGTCTGCCAACTTGGATATATTGGACAGCTATGTGAAATTCCCATAAGTCATTGTATAGATGGACTGTGTCATTATGGATCAAAGTGTGAAGATCTCCCTGGAGGATTTGTGTGCCAGTGTTTACCTGGGTTAACAGGACATTTCTGTGAAGTAAACATTGATGAATGTCAAGAGATACCGTGTGGAGCTCTAAGTATTTGTAAAGACTCCCTGAATGCATACGAGTGTTTCTGTGCACCTGGATTTATAGGCAATAACTGTGAGATTGAAGTGGATGAGTGCCGAAGTGACCCCTGCCACAATGGTGGCACTTGCTCTGATGAGTTAGATGCCTTCAGCTGCCGGTGCCCTGAGGGAATTGAAGGAAACTCTTGTGAAATCAACATAAATGAATGTCACTCATCCCCTTGTCTCCATAATGCAACGTGTATTGACATTATCAATGGCTATGAATGCATCTGCCTACCAGGCTTTACTGGCCCAACATGTGAAATTGACATAGATGAGTGTGCTTCTTCTCCCTGCAAGAACGGAGCCACTTGCATTGACCAACCTGGTAATTACTTCTGCCAATGTGTGGCTCCATTTAAAGgcCTGAACTGTGAATTCAGGCCATGCGAGGCCAGTAATCCTTGTGAGAACGGGGCCGTGTGCATGGAAGAGATGGACCTGGACGCATTTCCCCTCGGATTCAGCTGTCAGTGTGTGAAGGGCTTCGCGGGCCCACGCTGCGAGATCAACGTCGACGAGTGCAGTTCCAACCCCTGCCTCAATGGGTACTGCTATGATGGTGAGTTCGGCCTGGCTGGTGGATTCTACTGCCTTTGTAACCCAGGATATGCTGGAGTGAGATGTGAACAAGACATTGATGATTGTGTTAACCATTTATGTGAAAACAACTCAACATGCATGGATCTTCATTTGAGCTACAAGTGCCTCTGCCTTCCTGGATGGGAGGGGGGCTTCTGCCAGCGAGAGACAGATGAGTGTGTGTCACATCCCTGCAAAAACAATGCGGCGTGCACTGATCTCTTCAACGGCTACAAATGCACGTGCGCTCTCGGGTGGACGGGGGCAGACTGCGCGGAGGATGTGAATGAATGTGAATCTCACCCTTGTCTGAACGGAGCCAAGTGCGTTGAATCTGCCATCCCGGGGAAATTTAAGTGCATCTGCCCCCCATTCTTCACCGGTGACTTGTGTAAACAGCCCTACGATCCTTGTGACACACACCACAATCCATGCATACACAATTCAACCTGCTTGACACAGATCGACGGGACGGCAATCTGCATCTGCCAGCAGGGATTTGAAGGTACTCACTGTGAAATTGACACCAATGAGTGCATCTCTGGCCCCTGTCAGAACCAGGGCCACTGTCTGGATGGGGTCAATCGTTACAGCTGCGAATGTAAGCCTGGATTCTCTGGTCCTCGCTGTGAGGAGGACATCAATGAATGTGCTTCAAGTCCATGCAAAAATGGAGGAACCTGCCAGGACCTTATCAATAgTCTTTTGGTTTTAATCCCACCTGCGCTTCTCTCTGCAGGTTCCGTTGCCGTTGCGTACCGGGCTACTTCGGATCCCTCTGCGAGTACACCCTCTTCCCAGAATGTGAAAATCAATGAGCTGTACTCCAGCTATTGCTTGTCATGTTTGCTGCAAGACTGTCATGATCGCTGCAGGGCCGTGGTATTTCTTTGCAAAGAACACAAGCAGCCGTCTGAGTTTATGGCTTCCCCTCTGCTTcttgctgtgtgttttaatgtggctttatttaattatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201183 lncRNA upstream 741608 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA upstream 807559 12799509 ~ 12810735 (+) True G159800
TU201143 lncRNA upstream 938805 12676811 ~ 12679489 (+) True G159775
TU200938 lncRNA upstream 1970842 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 2178682 11436662 ~ 11439612 (+) True G159483
TU201465 lncRNA downstream 605706 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 644343 14306025 ~ 14306260 (+) True G160036
TU201556 lncRNA downstream 864055 14525737 ~ 14526508 (+) True G160107
TU201569 lncRNA downstream 897084 14558766 ~ 14563369 (+) False G160116
TU201568 lncRNA downstream 901172 14562854 ~ 14563369 (+) True G160116
AMCG00001718 mRNA upstream 15666 13592191 ~ 13602628 (+) True AMCG00001718
AMCG00001709 mRNA upstream 468038 13141097 ~ 13150256 (+) True AMCG00001709
AMCG00001708 mRNA upstream 606505 12984899 ~ 13011789 (+) True AMCG00001708
AMCG00001699 mRNA upstream 765571 12844164 ~ 12852723 (+) True AMCG00001699
AMCG00001698 mRNA upstream 825463 12787082 ~ 12792831 (+) True AMCG00001698
AMCG00001723 mRNA downstream 99 13661781 ~ 13667350 (+) True AMCG00001723
AMCG00001719 mRNA downstream 10899 13672581 ~ 13674756 (+) True AMCG00001719
AMCG00001720 mRNA downstream 35074 13696756 ~ 13702729 (+) True AMCG00001720
AMCG00001716 mRNA downstream 87229 13748911 ~ 13778516 (+) True AMCG00001716
AMCG00001724 mRNA downstream 150335 13812017 ~ 13814732 (+) True AMCG00001724
TU201065 other upstream 1286846 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 3703630 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 5456479 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 5684739 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 5871314 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 607933 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 1669938 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 1770655 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 2575580 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 2707731 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile