RNA id: AMCG00001719


Basic Information

Item Value
RNA id AMCG00001719
length 549
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00001719
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 13672581 ~ 13674756 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatccatttattttatttcctcacaGATGTCCTGCAGGATTTTCTGGTGACTTTTGTGAAGCTGAAATTAATGAGTGCTTTTCGGGGCCGTGTCTGCATGGTGCGATCTGCCAAGATCTTGTAAATGGATATCGCTGCCACTGTAGACCAGGTTGGACAGGCCTTCACTGTGAGGGTGACATCGACGAGTGCCAGCCAGGACCGTGCGACCAGGGGATCTGCGTCCAGAGCGAACCTGGCCACGGCTACACCTGTTTCTGTCGTCCGGGGTTTGTGGGGATGAACTGTGAACACAACTATAATGACTGTCTGATACAATCCTGCCCGGATGAGTATAACTGTGTGGATGGCATTAACGACGTCTCCTGCGTTCCTGCCGTCGCCAGCCCTGGCAGCACGGCTGAAAGCGCTCAGACAACACCCTGGAACTCCCTTATCAAACCCACGCCGGTGCTGCTATCCTCAACTATCTCTGAAGGCAGCTTACACAGTGCATACCAATCAGAAGGTAAGGAAAAGGCTTTCAAATCAAAGTATAGTTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201183 lncRNA upstream 795895 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA upstream 861846 12799509 ~ 12810735 (+) True G159800
TU201143 lncRNA upstream 993092 12676811 ~ 12679489 (+) True G159775
TU200938 lncRNA upstream 2025129 11625671 ~ 11647452 (+) True G159594
TU200801 lncRNA upstream 2232969 11436662 ~ 11439612 (+) True G159483
TU201465 lncRNA downstream 592632 14267388 ~ 14267722 (+) True G160024
TU201478 lncRNA downstream 631269 14306025 ~ 14306260 (+) True G160036
TU201556 lncRNA downstream 850981 14525737 ~ 14526508 (+) True G160107
TU201569 lncRNA downstream 884010 14558766 ~ 14563369 (+) False G160116
TU201568 lncRNA downstream 888098 14562854 ~ 14563369 (+) True G160116
AMCG00001723 mRNA upstream 5231 13661781 ~ 13667350 (+) True AMCG00001723
AMCG00001717 mRNA upstream 10899 13618294 ~ 13661682 (+) True AMCG00001717
AMCG00001718 mRNA upstream 69953 13592191 ~ 13602628 (+) True AMCG00001718
AMCG00001709 mRNA upstream 522325 13141097 ~ 13150256 (+) True AMCG00001709
AMCG00001708 mRNA upstream 660792 12984899 ~ 13011789 (+) True AMCG00001708
AMCG00001720 mRNA downstream 22000 13696756 ~ 13702729 (+) True AMCG00001720
AMCG00001716 mRNA downstream 74155 13748911 ~ 13778516 (+) True AMCG00001716
AMCG00001724 mRNA downstream 137261 13812017 ~ 13814732 (+) True AMCG00001724
AMCG00001730 mRNA downstream 222305 13897061 ~ 13908985 (+) True AMCG00001730
AMCG00001725 mRNA downstream 368162 14042918 ~ 14057578 (+) True AMCG00001725
TU201065 other upstream 1341133 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 3757917 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 5510766 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 5739026 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 5925601 7746681 ~ 7746980 (+) True G158676
TU201467 other downstream 594859 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 1656864 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 1757581 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 2562506 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 2694657 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_04285964_04292319.mRNA True 2339 mRNA 0.39 3 CI01000012 4285594 ~ 4293775 (+)