RNA id: TU201531


Basic Information

Item Value
RNA id TU201531
length 886
lncRNA type sense_over
GC content 0.42
exon number 3
gene id AMCG00001733
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14463730 ~ 14473159 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gccaaGTTGGAAGATGTTTATCTTAATGTGAAAGAAATATTGGTCAATCctatttccattattatttggAATACACCACCAGTTTATAGAATATTGGTCTGCTGCGAACATGTTCCACATCAAGCCTGCCAGCTGCCGGCAGCACCTATAAATAGATTTTGAAGCGGAGCTAACTGAGGTTAAATGGTCAACCCTTGCACTTCACAAGTGCTTCGATAGGACTGGGGGACTATAACAAAATATCTCTGCTCAACATTAGTTTAGTGGTAGTTCTGTTCCAGATTTGTTTGTAATGTTCATACAATGCAGATTACTTTTAGATTAGAAGTTTTAAACTACTAGTATAAAAGCTAAATTCAGACATGGAAATCTATCTTCTCCTTGACCACACTGTCCCCCCCAGGGCGGCAGGTGAAGCTAGCGTTCATTAACTCAGTTGCCAAGCCACCCAGAGATGTACGTCGACAGCAGGAAATCCATGGCACTGCACGCTCTTTGGGCCAGCATCCTACCCTTGACAAATCCAGtatCAAATCTTCAGACAAACCAAGATCCAGCTTACAGGACAGCTTGAAACTGAACAGCGATTACAGCACCCCCTCCAATGCCAGCACAAGCCAAGACCCCAAGAAATTCATCAAAAGAGTTGCTCCAATGATGGCGAAGTCCCTGAAGGCCTTCAAAAGCAGACTGGGACGCAGATAAAAACTGGATTACATTGGCTAATAGAGGTGTCCTTAAGATCCTTTGTTTCACTTGAGAACCCTCCCCCGTgtataattcaaaattaatgtaaatgctctttatatttgtgtgtatatagatacTGATTGTGTAAAGCACTGTACAAATGCATTGTCATTAAAATGTGCTGGAAACCGGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201482 lncRNA downstream 147587 14311141 ~ 14316143 (-) True G160040
TU201466 lncRNA downstream 195989 14267387 ~ 14267741 (-) True G160025
TU201434 lncRNA downstream 259962 14175741 ~ 14203768 (-) True G159995
TU201311 lncRNA downstream 712641 13750880 ~ 13751089 (-) True G159904
TU201247 lncRNA downstream 1462466 12997408 ~ 13001264 (-) False AMCG00001710
TU201534 lncRNA upstream 8550 14474242 ~ 14480359 (-) True G160085
TU201543 lncRNA upstream 26206 14491898 ~ 14493649 (-) True G160094
TU201599 lncRNA upstream 93460 14559152 ~ 14563505 (-) True G160132
TU201830 lncRNA upstream 1128915 15594607 ~ 15595355 (-) True G160311
TU201842 lncRNA upstream 1138151 15603843 ~ 15610716 (-) True G160319
AMCG00001734 mRNA downstream 2675 14435306 ~ 14461055 (-) True AMCG00001734
AMCG00001735 mRNA downstream 32388 14425275 ~ 14431342 (-) True AMCG00001735
AMCG00001732 mRNA downstream 42240 14398535 ~ 14421490 (-) True AMCG00001732
AMCG00001731 mRNA downstream 83053 14365447 ~ 14380677 (-) True AMCG00001731
AMCG00001743 mRNA downstream 104151 14348093 ~ 14359579 (-) True AMCG00001743
AMCG00001752 mRNA upstream 60817 14526509 ~ 14533785 (-) True AMCG00001752
AMCG00001756 mRNA upstream 85614 14551306 ~ 14570137 (-) False AMCG00001756
AMCG00001754 mRNA upstream 108121 14573813 ~ 14598148 (-) True AMCG00001754
AMCG00001755 mRNA upstream 158108 14623800 ~ 14637738 (-) True AMCG00001755
AMCG00001765 mRNA upstream 764680 15230372 ~ 15258616 (-) True AMCG00001765
TU201414 other downstream 312175 14147628 ~ 14151555 (-) True G159976
TU201233 other downstream 1530062 12931231 ~ 12933668 (-) False AMCG00001702
TU200551 other downstream 3792489 10670437 ~ 10671241 (-) True G159303
TU200475 other downstream 4242012 10221169 ~ 10221718 (-) False AMCG00001628
TU200134 other downstream 5923472 8514367 ~ 8540258 (-) True G158971
TU201592 other upstream 84997 14550689 ~ 14551764 (-) False AMCG00001756
TU201593 other upstream 84997 14550689 ~ 14566917 (-) False AMCG00001756
TU201595 other upstream 84997 14550689 ~ 14566917 (-) False AMCG00001756
TU201596 other upstream 91140 14556832 ~ 14570927 (-) True AMCG00001756
TU201597 other upstream 95796 14561488 ~ 14570927 (-) False AMCG00001756

Expression Profile