RNA id: TU201667



Basic Information


Item Value
RNA id TU201667
length 941
RNA type TUCP
GC content 0.42
exon number 5
gene id AMCG00001760
representative False

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15331620 ~ 15334580 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGCTGATTGACAGGTGGATTTGCCGGAAAGCAGGCGCAGAGTGTCGTCAGTTTAGAGCTGCTGTAAAGCATACCGCTGAAACTGTGACCCTCTTCCCCTCTTCAGCCGATCGCCTTGTTTCGCCTTCTTCTTGGTGTAAATAGTATCGTGTAACCTCACACATTGAAACAATGGCAGGGGTTTTGGCACGTAAAGCCGTGGACCACCTTCGGAGCAAGGAGTTCCGGGACTATTTAATGAGCACGCACTTCTGGGGGCCGGTTGCTAACTGGGGCCTTCCCATTGCGGCCATCACTGACATGAAGAAGAGCCCAGAGATCATCAGTGGGAGAATGACCTTCGCTCTTAGCTGTTACTCGCTCCTGTTCATGAGGTTTGCCTACAAAGTTCAGCCCAGGAACTGGCTACTGTTTGCCTGCCATGTCACTAACGAGACGGCTCAGCTCATCCAGGGAGGAAGACTTATGAAATACAAaatggAAAAGAAGCAAGCTGCCAAATAACACGAAGCCAGGAGTTTTCTTCTGAACCGCATTGCCACCTATAATTTAAAACGGATCACgcctattcattttttaatctcaCATGGAGCACCTGAATTAAACTGCAAAATAGACTGTTACTACTTTGGAGTGTTTGAAAGTTGAAAATAATGTCATTTAAGGATATGATCAGCTGACTGTAATGTTCTCTGGCTGCATTTGATGTGATTCTGTATCATAATGGAAATTGTAAACCAATTTTTATCTTTAGATAGACTTGATGGTCTGTCTGAACTCCAAGGGAAAACTATGTAAACACGTACACAACCTTTTTCAGTCTATGTTAATACCAATGGATTAATTGATATTTGCCATTCAAGCTTTAAAGTTATGCTGTTCAAGTTCAATTTTTGAATTTCTAAATTTATtcttgaaggaaaataaaaaatatatacaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201615 lncRNA upstream 630164 14701134 ~ 14701456 (+) True G160144
TU201590 lncRNA upstream 699130 14629303 ~ 14632490 (+) True G160129
TU201569 lncRNA upstream 768251 14558766 ~ 14563369 (+) False G160116
TU201568 lncRNA upstream 768251 14562854 ~ 14563369 (+) True G160116
TU201556 lncRNA upstream 805112 14525737 ~ 14526508 (+) True G160107
TU201689 lncRNA downstream 67718 15402285 ~ 15417554 (+) True G160200
TU201919 lncRNA downstream 494209 15828776 ~ 15829766 (+) True G160375
TU202021 lncRNA downstream 779777 16114344 ~ 16114699 (+) True G160463
TU202022 lncRNA downstream 782638 16117205 ~ 16119266 (+) True G160464
TU202122 lncRNA downstream 942239 16276806 ~ 16278054 (+) True G160542
AMCG00001759 mRNA upstream 5882 15285864 ~ 15325738 (+) True AMCG00001759
AMCG00001758 mRNA upstream 65436 15264098 ~ 15266184 (+) True AMCG00001758
AMCG00001766 mRNA upstream 213435 15016232 ~ 15118185 (+) True AMCG00001766
AMCG00001767 mRNA upstream 382482 14944806 ~ 14949138 (+) True AMCG00001767
AMCG00001757 mRNA upstream 533685 14721926 ~ 14797935 (+) True AMCG00001757
AMCG00001761 mRNA downstream 53479 15388046 ~ 15392676 (+) True AMCG00001761
AMCG00001762 mRNA downstream 97800 15432367 ~ 15434225 (+) False AMCG00001762
AMCG00001770 mRNA downstream 158680 15493247 ~ 15501705 (+) True AMCG00001770
AMCG00001769 mRNA downstream 167503 15502070 ~ 15525306 (+) True AMCG00001769
AMCG00001768 mRNA downstream 215024 15549591 ~ 15552415 (+) True AMCG00001768
TU201467 other upstream 1061430 14269615 ~ 14270190 (+) True G160026
TU201065 other upstream 3000172 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 5416956 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 7169805 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 7398065 7933156 ~ 7933555 (+) True G158725
TU201717 other downstream 97770 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 902695 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 1034846 16369413 ~ 16372304 (+) False AMCG00001814
TU202413 other downstream 2082784 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 2853335 18187902 ~ 18200855 (+) False AMCG00001881

Expression Profile