RNA id: AMCG00001761



Basic Information


Item Value
RNA id AMCG00001761
length 666
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00001761
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15388046 ~ 15392676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGAGCGTCCCAAAGGATACCAGAATGGAGGGACAAGCGGAAGAGAACAACGTCCCCATTCACAAAAACGGCCCAGAATCAGGGAAGAGGAATGGGCTCATAAACACTCGGAACCTCATGGTGGAAACCAAGGATGGGCTAGTGTCAGTGTACTCCGCCCCTCAGTACCAGGGCCATGTGGTCGTCAACCTCCCGCCGCAGAACTCTGTGGAGAACAGCAAGAACAGCCCAACCCCACAGCTTCTCAACCCCAGTACTCTTCCGCAAGCCATAGATTCCCACTATCGGCCCAATATCATCCTGTACTCGGAGAACATGCTGAAGTCGTGGAGCGAGAGCATGGGCACAGATTGCTGTGAGACCACCTTCATTGAAGACCTGTCCCCCACCAAAGATGGCCTAGTGTTCGCCGACGGAAAGTTTTTGGACCTCTCTGCCGAAGAtgccaaaatacaaacactCTCATATGATGTCGATGTTGACGACGATGATGAGTTTCAAGAACTAGAGAGCGATTATTCAAGTGACACGGAAAGTGAGGACAATTTTCTCATGATGCCCCCGAGAGATCATCTGGGACTGAGCGTCTTCTCGATGCTGTGCTGTTTCTGGCCTCTGGGGATCGCTGCTTTTTATTTATCGCACGAGGTAAGAGAAACTTAA

Function


GO: NA

KEGG:

id description
K23903 SYNDIG1; synapse differentiation-inducing gene protein 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201668 lncRNA upstream 53479 15331620 ~ 15334567 (+) True AMCG00001760
TU201615 lncRNA upstream 686590 14701134 ~ 14701456 (+) True G160144
TU201590 lncRNA upstream 755556 14629303 ~ 14632490 (+) True G160129
TU201569 lncRNA upstream 824677 14558766 ~ 14563369 (+) False G160116
TU201568 lncRNA upstream 824677 14562854 ~ 14563369 (+) True G160116
TU201689 lncRNA downstream 9609 15402285 ~ 15417554 (+) True G160200
TU201919 lncRNA downstream 436100 15828776 ~ 15829766 (+) True G160375
TU202021 lncRNA downstream 721668 16114344 ~ 16114699 (+) True G160463
TU202022 lncRNA downstream 724529 16117205 ~ 16119266 (+) True G160464
TU202122 lncRNA downstream 884130 16276806 ~ 16278054 (+) True G160542
AMCG00001760 mRNA upstream 53466 15331707 ~ 15334580 (+) False AMCG00001760
AMCG00001759 mRNA upstream 62308 15285864 ~ 15325738 (+) True AMCG00001759
AMCG00001758 mRNA upstream 121862 15264098 ~ 15266184 (+) True AMCG00001758
AMCG00001766 mRNA upstream 269861 15016232 ~ 15118185 (+) True AMCG00001766
AMCG00001767 mRNA upstream 438908 14944806 ~ 14949138 (+) True AMCG00001767
AMCG00001762 mRNA downstream 39691 15432367 ~ 15434225 (+) False AMCG00001762
AMCG00001770 mRNA downstream 100571 15493247 ~ 15501705 (+) True AMCG00001770
AMCG00001769 mRNA downstream 109394 15502070 ~ 15525306 (+) True AMCG00001769
AMCG00001768 mRNA downstream 156915 15549591 ~ 15552415 (+) True AMCG00001768
AMCG00001776 mRNA downstream 185499 15578175 ~ 15610687 (+) True AMCG00001776
TU201667 other upstream 53479 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 1117856 14269615 ~ 14270190 (+) True G160026
TU201065 other upstream 3056598 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 5473382 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 7226231 8159146 ~ 8161815 (+) True G158836
TU201717 other downstream 39661 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 844586 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 976737 16369413 ~ 16372304 (+) False AMCG00001814
TU202413 other downstream 2024675 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 2795226 18187902 ~ 18200855 (+) False AMCG00001881

Expression Profile