RNA id: AMCG00001772


Basic Information

Item Value
RNA id AMCG00001772
length 6002
RNA type mRNA
GC content 0.45
exon number 13
gene id AMCG00001772
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15525698 ~ 15548444 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGAAAGAGGAATAATACGCAGACCGTGGAGCATGACAGCTCTGTCACCAGTACCTTGCTGGACAGCAGCTCGGAGCTGAAATACTGTCACAACACAGGACCAGGGGACCCCCAGCCCAGAGGGGAGTACGATTCTGCAGACCCCGACTCGGACAAAGCCATGAGAAGAAAAATGAGGAGCGCGTTCTGTCTGAGGGACTTGGCAGGCACACATCACCTTGAATCGGGGACAGCTCACCAGGCGGGGGCTAACGTTTCGGGAAACACGGTCCTCCCAGGGGGTGTCAGTCTTCAGGCAGGCTGTCCGTGGTGTCTGTGCTGCTCCTCATGGCGCAGTGCTGGGCTGGAGAACGCAGTCTTCGTGGAAGCGCTGGGGGGGGTCTGGAACTGTATTCATACTGCACCACGTTCTGCAAGCCCAAACTGGAAGGCCTTACCTGCCATCTGGATGACTGGAAGAAGCCCCAAGCCCTTCACACTCTCTTTATTCCTAGACAGCATCACGTTTGCCATCTCCACTATGATAATGTATGGGTTGGTCTTCACACTGAGGAAGATTTTCCTTTGGATGCTGGGAGTCTACTTAACCATTCCATTCATCGTTAAACTCTGCCCTTCCATTCAGGCAAAACTAGTTTTTCTAAACTTCGTGCGGTTACCTTATTTTATTGACTTGAAGAGGCCCCAGGACCAGGGCCTGAATCACACCAGCAACTTCTACCTCCAGCCAGAGGATGGGATCAATATCGGAGTCTGGCACACCGCCCCGTCTGTATTTTGGAAGGACGCCCAGGGTAAGGACCAGGCGTGGTTCGAAAGCACCTTTCAGTCCTCGCACCCTGTCATGCTGTATCTACACGGCAATGCCGGGACCAGGGGTGGGGACCACAGAGTGCAGCTGTATAAGGTTCTTAGTTCATTAGGGTATCACGTAGTTACATTCGATTACAGAGGATGGGGGGATTCGGATGGCAACCCCTCCGAGAGAGGAATGACCGCAGACGCCATCTTCATGTATGAGTGGGTGAAGCAGAGGAGCAAGACCAATCCCTTGTACATCTGGGGTCATTCACTGGGGACGGGGAACGCCACCACACGCTTTAATCTTGGAATCTCCTTTCACCAACATACGAGAGGAAGCAACAAATATTTGCCTGGATTTGACTGGTTCTTTTTGGATGCCATCACTGCAAACGATATTCGATTTGCAAGCGATGAGAATGTGAAGCACATCTCCTGCCCCACGCTGATCCTCCACGCGGAAGATGACACCGTTGTACCATTTAATCTAGGAAAAAAGCTGTACAACATCGCTTCAGAGTCCAAGAGTCTGAGTGGGCACAAGGTCCAATTCATTCCCTTCTCCAAGGCCCTGGGCTACAGACACAAATTCATCTACCGGAGCCCCGAGCTGCCACATATACTGAGTGATTTCCTTGGCGTATCCCAATCGCAAGCATAGCTGCCTAAGTTTGGAGTCTAAATTATTCCTGTGTACTTTCCaacaccaccaccccccactaccacccacacacacacacacacgcacacacacccttcCCCCCCagacactgttacacacacaagcatggGCTGGTGCTCCATTACCATCCATCACCCCCTCAAACTGAGAAAAACAAGGCAAACTGTGGGAGCGCAGTCCTTTCTGGGGATGCGTGGCCGGGGAGATGGGAGGACAGCCCGAGCACAAAGCCAAGCGTATGCACTGACGCAGGAGCCACGTTTCGAGTGACCTCTGGAGTGGGAAGAACAAGAGACCTCGGTGAGCCTGGAGTTTTTATTTGCACAACAAATCTAAGCAACCTTGGGGACACAACATGCAAGTTCTTTGAAATCCCACTAGGTGACATCTGGACCTGAAGAACGGTTTGTGTACCTGGCAGAGCAGCTGCCTCAACTTCAACCATGTGTTGGGCAAATGCAAAGACCCTGcgcattgattgattgattgatttttattttttttaatgcttgaaCCTTTATCATTGACTAATAGGAATAGGCAGAGAAGGTGACAGAAATACAAAGATCCAGGCAAGGTGAAGCTGCATATATCTACACATGAACACCACTCAATACACTTTCACCCGATTCGGTACCATAAAAGAGACGACTATTTCCCTATTGTATTATATACAATCTAATTCTTCACCGAGTCACATAGGAGCTTCCTCAGCCAGGCTAACTTAACGAGTCCTCAGGAAAGACGCGTGAATTTGAATAAGATGTCATACAATCTTGCAATCTCCTACCCGAACAACCAATCCTTATTAAGTGGACCAGACTTTAAAACACCAAACCATCCTAAAATGAAAGCTCAGCAACCGCATTCAAAGAAATCTCACAGATTGTGCGTATTAGTCTGCGAATCGGTGAAATCTTTTCATACCCGGTTCCTTGGTGCCAGCTTCTTATTGATCGTCCATCCGTTCGCCATTCATAGTTGTGTGTGGCAAGAACTCAGTTTTGCTCTTccactttgaaaacaaatgtttaggCTTCAGACTGAGGGAAAAGAGATACCCTGGAAAGTGGTTGGATGCAGTGAATGAAAATCAATAGCACTTTGAAGCTGAAATAACTTACCTTGAAAGCAGAGACTGTAACAAACACTAAACATACCTCCCCCGTCTGTCCCAGTAGTTTGAAGATGTCTGTAATAACAGCGTGCTTTAATAATTTCCCTTGAATTTGAAAAGGTCATTTAAATAACCACTTGGCTATAGCAATGCTGTAATTAATGTAGTATTAAAGTTTTGGAACATCGCCTCTGTATTATGCAGTCTGCAAAGAAATAGGGGTGAATTTAGATTATAAAAGTAGCAAATTTTATTAAAGCACACAAGTAGTCTGTGAAAGGCTTAATTAATGTAAGAATTTAGGAGCCCTCAAATAGGACATTACTATACAATACtatgtcaaaaacaaacaaaaatacctCATAGACACAGCAGGAACTTTCTTGTGGGTTGGGTGGGTGTGTTTCAGTACCAGATAGTCTGATATAAGGAAGTTTATCTCCTACGTACAGGTCATGCCAGTGGAGGTGGATAGACCATATTCGAACTAGAGCTATCTTTATTTTACTCCGGCTGTGTCGCTCCTTTTAGTTGTCatcaaacaaatggaaattaatttggAGCGACTGCCATTCTTTACCCGTTCGTCTGCGCCTCATCCGTGGTCTCGGCAGACGGTGTGAGGAAATATCAGGGATGCTACAAAGGGAAGAAAGAGAACCGTACAAAATGGTGCCGTGCAGCTAAACTCTAAAACTGTCCTCCATTCTCTGTGATGTCTATCTGGACATTCAAACGATCCCATATTGCACTCCACGCCTCTGACCTCCTGGGGACATTTGGGTTGCGTTCGGGCCAAAATAAAAGGGCATCCTCTCTGCTGGCTGAGATGTTCACAGCccagtacttaaaaaaaaaaaaatgaacatatctttatttgtaaatgtgcaACTGATCATGAggtttatatgtgtttatatatcaaTTGGGTTGTGATGGTCCACATTCCAGGAAACAGTTATGGATTACATTGCTGTGCtgctttctgtaaaaaaaaaaaaaaaaacttgaccAAACGTATTTAttcatggctttttttttttttataatcagtttaacttttttttttcgccTGGCTTGTTTGGCAAGAGAAATTCCACGCCACTGTATAGAAATGACCCATCATATGCGATAAGAGATGGGGAAACTGAAACTCACATCTCCGGCCGAGTCCAGAGCCACCCTGGGTAGTTGGCAGCCCTGGGTGTCCGGTATGGGAGGGGAAACGTGATTGGTATTCATAAGATTTCATGGCTCAATGGTCACCAGGCAGCTTGACACAATAGTGCATTtatccattgttttatttaatgcgATTCCTTTAGAAAGTGTTACGCTGGTCTGGCTCTTTCCGGATGTAGTCATACAGACACATTAAGAAGCAGCTATTCTGATCATGTGAACAACGGATAGTTAATCATCATTAAAACCTGACTCTTTGATGCTTAAGTTACTGATACTATATTGCTTGTTATCcgctttaatttattattgttttaagaatTCAATTAAGTATGAATATATTGATAATAGCTCTAAACTGAAGTGTTTTGGTTTCTAATTTGAATTGATTGCTTTGTACCTCTTCTATCATATCCGCATGGAACATGTTGATACTAACTCTCTATGGCACTGTAACAGTTCATGCACCTTCTGTCGTACGGTATTGACCTTCCTCTGCATAACAATATGAAGCACCTACCTCCTGCTACTGTGGAGACATTTCCTTCAACATCAGAAGCCTACTCAGAGTGGTTTGTACACATATTCTTCTGTTCTCTTTATTTCTGATTGTGGAGGTTGCTTAAACAACCCCGCAAACATACAACGCCTCGTTAAGATGTTGAGTGTGGCACAGTGCTTTGAAGCCCCGGGCTGCAGCACATAAACACTCCTCCACCGGGTTTCCCGTCCTTGTAGGCTTTGGTTGGGTTTCcacacaattattaatatttgttttaacgTATCAGCGGGTTTCCCTGTCGAAGCTCAATCTAATCGGAAGCAATACGTTACTGATAAGAACAATACCCGATAGAATGTGAAATAGTCAACTGAATTCCGGGATGAAGTGGCGGGGCTGGATTAACAGTATAGCCAAGCGGGTGTCGCAGCCGAATACGCCAGGAATGAGCGCCCGTCTTCTGTATAGTACGAAATGATAAACCAGCAGGTGTCGGCACATTTAAGATATTTTGGAACCAGCGCTGAACTGGTCAGCATTGCTTGTAGAAAACTGAACCTGTTCTCACTGCGGTGTGTTTTAGGTGTAGAATCGGTGAAATTAGCTCTGTCGCTGCCTAATGCTGATGCATGAATGCTTGTGTAGCTACATTTCTACATCCAGTAGAAAAACTGCAGCTTCGGCGTTGTATTTTTTCCAGGGATGAATTTAATGTAAGTGCTGTTTCCTTGTCCTTCTCTGCTATGGGGAACCGGCTGCTCCGATGTGACCGACTAATGGGATTGCTGTCGTGCAGTGCTCTTCTGATCTCTCTGTTTAGATAAACTAATCATCGGTGTGCTGTAAGACGCCAGCTTTTACAAATCGGtgaatttcattatttgttcaaTCGGATTCCGTCGTACAGGGAATGTTTCGGGCCGATCCACGAATCACACATCAGTTTCCGGGTGTATGGAAACGGACACCAGAACTGGAAGGGGGTGAAAGATGGTATGCGATGGAAAAATGTCTGTGACTGTAACTTGGTGCGCTGCTCCATTCGGTCTCTAGCGGGTTGTTGGATTATGTCGACATTTAGTTACGACTGAGAACTTGGAACGAGAGGCTGGTtggatatttaaattacagcaaCTTGGcaccattattttttttgtatcgtGCATTGGTATGATTGTACCTTGGCACAGTATCGGTCTCACTTTAAATTCAGGCCCCGAGCTCTACTGCACTCCAAGTTTTTCccaccagaaaataaaaagcctagGGGTAAAATATGTAATCTCTATGGAGACCAGAGACCTCAAGGGTCAGTGAATGTAGAGAGGGGAGTTTaccagcatgcactgcagcaCAATTTTTTAACCCAGGTCTTTCTGAAGGTACTGAGGAGCTGTAGGCTTGAGCAGATCCAAACCGTGCCCCGGTGACTGTTCATCAGTGTCATTGTCATTCTTCGTTAGCATACCATCACGCCATGCCCGGACGGCTGTGTGATTTCTGTGTGGCCCTGTGTGTTTTATCTCAAATCCCCTTGCTTCCACGAGAAGTGTTATCCACAGACATCTCTCTCCAGTGGTTACCAAGTTCAAACTGTTTAGAAGGttcaatgtttttctctttttttgtaagCTGCTAAACTTGACTGGattgaaaatgattattttatgtatgtttttaaataataaataacaataaaaatattacCTCAATTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0047372 acylglycerol lipase activity molecular_function

KEGG:

id description
K13704 ABHD12; abhydrolase domain-containing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201599 lncRNA downstream 962193 14559152 ~ 14563505 (-) True G160132
TU201527 lncRNA downstream 1008413 14420937 ~ 14517285 (-) True G160080
TU201830 lncRNA upstream 46163 15594607 ~ 15595355 (-) True G160311
TU201842 lncRNA upstream 55399 15603843 ~ 15610716 (-) True G160319
TU201877 lncRNA upstream 143125 15691569 ~ 15692614 (-) False AMCG00001784
TU201932 lncRNA upstream 243552 15791996 ~ 15796358 (-) True G160387
TU201925 lncRNA upstream 280314 15828758 ~ 15829761 (-) False AMCG00001791
AMCG00001771 mRNA downstream 23905 15500360 ~ 15501793 (-) False AMCG00001771
AMCG00001773 mRNA downstream 52009 15450729 ~ 15473689 (-) True AMCG00001773
AMCG00001764 mRNA downstream 76585 15438824 ~ 15449113 (-) True AMCG00001764
AMCG00001763 mRNA downstream 166679 15336021 ~ 15359019 (-) True AMCG00001763
AMCG00001765 mRNA downstream 267082 15230372 ~ 15258616 (-) True AMCG00001765
AMCG00001774 mRNA upstream 4249 15552693 ~ 15575397 (-) True AMCG00001774
AMCG00001777 mRNA upstream 64232 15612676 ~ 15640633 (-) True AMCG00001777
AMCG00001779 mRNA upstream 94375 15642819 ~ 15654841 (-) True AMCG00001779
AMCG00001778 mRNA upstream 106927 15655371 ~ 15677438 (-) True AMCG00001778
AMCG00001784 mRNA upstream 143139 15691583 ~ 15702400 (-) True AMCG00001784
TU201759 other downstream 5059 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 23930 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 23930 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 23930 15500363 ~ 15501768 (-) False AMCG00001771
TU201596 other downstream 954771 14556832 ~ 14570927 (-) True AMCG00001756
TU201878 other upstream 145230 15693674 ~ 15702500 (-) False AMCG00001784
TU202328 other upstream 1542974 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1982422 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2311695 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2360310 17908754 ~ 17910853 (-) True G160925

Expression Profile