RNA id: AMCG00001774


Basic Information

Item Value
RNA id AMCG00001774
length 6430
RNA type mRNA
GC content 0.56
exon number 29
gene id AMCG00001774
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15552693 ~ 15575397 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGGCAGCCTCGCTTTCGATGCCGGCGCAGTACCTACGGGCTGGCGGAGGCGCAGGCGGAGCAGAGGTGCCAGCGCCGGCGGGGAGGATGAGCGCAGCCTGCTAACGGATGGGGACGGTTTTAATCATGGAGGGAAACTCCGGATCTACCGCGATCACACCCCGCCGATAGCAGCGGGAGCAGAGGCGTGCAGCCGGGGACGTCTGACTGCCGCAGCATGCCGTGGGATGGATGAGGACGAGCAGACCCGCTATGTCTCGCAGCTCAGGGAGGTGTTCGACAGCTGCGACACCACTGGCACCGGCTACCTGGACAAGGAGGAGCTGGCGGAGCTGTGCCGCAAACTGCACCTGGAGCCGCACCTTCCCGTGCTGCTGAACACGCTGCTGGGGCCGGACCACTATGCCAGGGTGAACTTTGAGGAGTTTAAGGAAGGTTTCGTGGCCGTGCTGTCCCACTCCCTGGAGCTCAGCACCTCTGAGGATGAGAGCAGCTACCTGGAGCCAGTCGTCCCGGAAGAGGTGAAGCCCAAGTTCGTGAAGGGGGCGAAGCGTTATGGGCGCAGGTCTCGCCCTGAGGGTCCCGACTCGGAGACGAAGATCACTGCGGACTGCGCAGAGACCCTCCCCTTCAGGGCGGCCAAGGCCGACCCCTTCCCTGTGGCCGGCAGGCGGTTGCAGCTGAGACGCTCCACGTCGCTGGAGAGTGTGGAGAGCCTCAAGTCCGATGAAGAAGCGCCGAGcaataaacaaactgcacacGAAATGTTTGAGGCAGAAGGCCAGCTGAAGAAGTGGAAGCCGGATGTGTCGAGCAGCCCGAGACAGACGGACAGTCCACAGCAGGACGTGACGGATGGACAGATGCTGGCGATCTGGGAGGAGCTGGGGGTGGGCGTCAGTGGCTACCTCAACAGACAGGAGCTGTCCGTCGTGTGTGAAAACATCGGCCTCCAGGACCTCCGCACCAAGGAACTGGACCTGCTGTTCCACAAGCTGGACACGGACCGGGACGGCCGAGTGGGCCTGAAGGAGTTCCAGAGGGGGCTTTTCCGACACAACCCCTCCTCCGCAcccacctcctccacccccaTTAAGCCCCAGCCCCAGCGGTCTCTCAGTCAGGCCTTCAAGGACAGTGCTGGCAGGTCggcttccccctctctcctctcagccACCGTGGGACCCCGCCTGCTGTCCTGCATCGACGATGGCTCCGGCTTTGTGACCGCTGATCAGGTGATCACCATCTGGAGCGACGAGGGCATCAGGAACGGCGGTGGCATCCTCCAGATGCTGGACTTCCCTCTGGACGAGAAGCTCAGTCTGGCTGAGCTGACACTGGCGCTGGACAACGAGCTGCTGGTCAGCGGGAATGGACTCCACCAGGCCGCCCTCGTCAGCTACAAAACTGAAATCCAGTTCCTGCATGTCCAGGCAGAGCAGGCCTGTAAGGAGAGAGACAAGTTCCGGGCCGACCTGGAGCGAGCTGAAAAGAGGAACGTCCAGCTGGCCAGGGAGGTGGATGACCGGCATGCGGCAATGGAGACCCTGAATGAAAGCAAGATCAAGGACATCGAGCAGGAGTACCGGGACAAGCTGGCGGCCATGCGCAGCGAGGCGGAGGGCGAGACCGAGAGGCTGCTGCAGCAGGCCGGCCAGCACAGGACCCgtctggaggaggagctggagagcGTGCGGGCCCAGGGTGTCGGACTGAGGGAGGACGTGAGCGCCACAGTCCAGGAAAACATCCACCTGGAGAAGGAGCTGAGTGAGCTGAGGAGGAAGCTCTCCGAGTCCGAGAGAACCGTGTCCAAACTGCAGAGGGACCTGGATCACCTGCTGATCGACAAGTTTGGCAGCTTCGACTCACTTGGCACTGGTCTGCTTAGCGAGGAGGAGCGCTTCTCCCAGATAATCAAGGAGTACGAGCTGCAGTGCAGGGGCACTGTGTCCCGCTTTCCTGTCTTCTCCTGTGCTCTGTTGCAGGAACTGCGTGACAGGAACGACGAGCTGAACACCGAGCTGGAGATGCTGCGAGGCTCACGGCCCGACAGGAAGTCGCATCAGACACAGGACAGCAGGGCCGGGCAGAGCAGGACTGGCGTCCGCCCACTGCCCGCTGACTCTGACTCCGATGATCAAGACATCCCCAGGACTGATGAATATCCTCGTGTCAGAAGAAAACTACACATAGCTGACAGAAATGGTTTGGGTTCTCTCCAAAATGATCCACCTGACATGAGCATCGAAACTGAGCTGGCAATGCAGCAGCTGAAAGATAACCATCAGCAGGAGGTCCAGGATCTGAAGATCCAGCTGGAAACAAAGGTCAATTTCTATGAGAGGAATATCGAACTGATGAAGAGGAACATGGAGGTGGAGCGCAAGGACATTGGGGAGGGCTTCAAACTGGAGATCAGCGAGCTTGAGGAGCAGAAGGGCCAGCTAGAGGAGAGGTGCGAGCGGCTGCAGGCAGCCGTGGCGGCTCTCAAGGCCCAGCTGCAAAACGCCTCCTTGGGCCCGGAGCAGGAGAAGAggctgctgagagagagggcCGAGCTGGAGCAGAACTATGCCAAGGAGATCTCCAATCTGGTGCAGAGACTCAGCGCAGAGAAGGaccagctggaggaggagctcACCAGCCAGAGGGAGCTGGAAGTACAGCAGATCAGGAAAGAAGCAGTCGATGAGGTAGAGCAAAGGTTGTCCCAAATTAAATCTCAGCACGCGGAAACCCAGAGGACACTGTCGCATCAGCTGTACTGCGAGAAGAGTTGCCTCCAGAGCCTTCGGCAGCAGTACGAGCAAGACCAGCGTATGTGGAGAGCTAGGGAGCAGGACCTCCATCTGGAAAGCAGGAAGGACAGGCTGAGAACTGAGGAACTGATGAGTGAAGAGCAAGCCAGGATCTGCAACAGCTTTGCTCTGGAGAAGAAACGGCTGGAGGATCGACACCTGGAGCAAGTAAAGCTGTTGCACAGTGAGATCCAGGAGCTGAAAACACACGTGGCTGAGCTGAAGAAGAAGGAAACCCTCCTGGAGAACTGCACCAAGTCGCTGGAGGCCCAGGCAGCGCTTGTTCAGCGGCTCACTGCTGACCTCAGGACCAGAGAGGAGGAACTGGAGAGGGTGACAAAAACAGTGGACGAGTTGCAGACGCAGCAGGAAGACAAGCTGATCTATGTACAGGTCAAACTGGAGTCAGAACTGAAGGAGAAAGAGACCGTTCTGGAGGGCTATACTTCTGCCCAGGAAGATGAGCTGAGAGTTCTGAGAAGACGGAGACGACACGGCAAAGGGGAATTGCTCCTCCAGTCTGACGATTTAAAGTCTGAGGCAGAAGACAAAGGAAGACTGGTGGAGGGACTGAACAGGCAAAGTATTGCACGTGAGCCACTGCAAGCCCAGCTTCTAGATGTGGATGGTTTGAAAAGGAAGGAACAAGACCTTCAAGATGAACTAGAGCAGGAAGGAGCCAGCTTGCTCTCGATCCAGGCGAAACTGGAGTCTGAGATGGAAGACAAGAGGTGGCTCCTGGAAGACCAAACGCATTTAGCTGTCGTTTCAAACAGTCTGTCCTCGCAGGTGGTGGAGAAAGATGGAGAACTGTCAGAGCTCAGAGAGACCATAGACGGCTTAGAGTCACAGTTAAAGCAGAGGGACAGCCTGATCCTTGAGCTACAGGTACGACTGGAGTCCCAGGGCAGAGACGATGACTTGGCCAAGAGGTTACAGCAGATGGAGTTCGAGGCGCAGTGCCAGTTACAGCAGGCCAGACAGGACTtcgaaagggagaaggaaaaaatgaaagagcAGCTGTTGCAGATGGAGAAGCTGGTAACCGATCTGGAGACGGTCATGGATGGTGGCATGGCACACAGGGCTGAACTCGACAAGGTCAATAGTGAGAACAGTGCACTCAAAGACCAGCTGTCTGCACTCCAGGAACATGTTCAGAAACTCAACGTTGATCTCAACAGAAAAACAAAAGAACTGGAACAGGTGATGAGTGAAATGGAGAAGAAACAGAGTGACGTAGAGCTCGTCTACAAAGAGAACGCCAGGTACAGGGCCGAGGTACTGGAGATGAGCAACAGGAACCTGCAGCTGAGCAGCGAGAACGCCGAGCTGAACAGCCACATCAAGGCTGATCAGGGCGCCATCCAGCTGCTGAACGAGAGGCTGGCCGAGGTCTCGCTTCAGAAGGGAGAGGAGGCCGCACTTACCAGgcagctgcaggaggcctcGGCCAGGCTGCAGCGAGAGCAGCTCCAGCAGGAGGCCAGCTGGCAAAGAGAGCGAGAGCTGAAGGACCAGGAGCTGCACCTCGCCAAGGAGCAGCTCCAGCACCTGAAGGCGGTGGAGTCTGAGCTGACTAGCCTGGCCCTGAAACACCAGTGGCTGGGGCAAGACAAGGACAGGCTGGAGAAGGAGGCCGAGGAGAGGAACCAGAAGATAGAAGAGTTACAGGCCTCCCTGCAGGCCCTCAGCAATCAGGTCGACCAGCTGCACTCACAGCTCCTGGCAGCCAATCGGGACCGGGGCCTTCTCACTGAGGAGgcagcagccaatcagaagaGGTTGGAGGAGTCTATGGAAAAGATCCAGGAGCTGGAGGCCAGCGCTGCGCGGCTGCAGCACGAGAAGGAGCAGCTGATAGTTGCACGGcggcagcaggagcagcaggagGTGGAGGCGATGCAGAGTCGAGAGGCCGAGCTGAGGCACGTGACCCAGGAGTGCCAGGCGCTAAGGAGCAGACAGGTGCAGCTTGAGTCCGACCTGCAGGACTCCCGGGACCAGCTCCTAGAGGCCCGCACCTCCCTCACGCTGGCGCAGTCACGGCATGCGAGGGAGCTGGAACAGCTTCGGGAGCGGGCGGACGCGGCACTCCCCAGGGAGCAGGCGCAGTCGCTGCAGGGGCAGCTGGTGGAGGAGCGGCACCGGGGGCAGGAGCTGCAGGAACAGCTCCAGGCGCAGGCGCAACAGGCTGGCATGCAGATGTCTCTGCAGCAGGAGCAGTATGAGAACGTGCTGAAACGGATGGAGGAGAAGATGGAAGACGTCGAGGCCAAACTCAGGAACCTCCGGGTGATGCTCCAGGAGAAGGTGGACCAGCTGAAGGAGCAGCTGTCCAAGAATGCCAAGTCGGACGTGCTGCTGAAGGACCTGTACGTGGAGAACTCGCAGCTGATGAAGGCCCTGCAGGTGACGGAGCAGCGGCAGAAGAGCGTGGAGAAGAAGAACTTCGCTCTCGAGGAGAAGATTGCCGCTCTCAACAAGCTGCTGCGCAAGATCGCCCCAGCCACTCTCACGGCCTAGGCCCGGGACCCCCGCAGACTGCTGACCGTTCCCGCAGAGCCACCGACAATCACCCCCAACCTCATGCCCTATCGGTGTAGTTCCCCTTGCACAGACCATGGCTTTATGTACGTCTGGATTGATGGGTGAATTTCATTCTGTTGCACTATATGTTGCAAATCTGATTTCTCAGGATGGGGGGGAggttttatacacaaaaaacatgtttctgccATCgcagtgtatgtatttttattttttctgtatctgCATCTATATCAAATTTgaaccaatatttttttttgtgcggGATCAATCATCAGTTCGTCTTCTAAGACCGCCGGTATTATATTAAGGTACTGAACACTGTGAAATAAGGCAACTGGTTTGCTGAGTGCAAGGCAGTGTGATCCTTAATAACAGCAGCTGCGGACACCCTGCCCGGACCATGCGTGTTTTCTTTGCTGCCCCCCATTTCTCCCTCCACAGCCGGGGAAAAAGGGCAGTGATGGCAGATCTACATTGAATATCATAGTATTTCAGAAGAAGGAACTGGAATATTCCTTTCTGGGGCTtggtaaagaaaaagaaaaaaagaggaacatcttccaaaaaaaaacaccaccacttGAATAATGTATCTTTGAGGTACTAAAAACTGCATAGAGGTACAGTCTAGTAATTGAAATGGGGAGGAAAGGAAGGGGGAATATGTTTTTTCAGAACCCAGTCAGAGATTGTGTATACTTAAGCAGGTGTACAGTTTTGATACAAGTGTACATACCTACAGTTCTTCCTAAAACCTTTTTGAAAGCGCACACCTTTTGTAACTTGATGCACTGCTGTACAAACACTTCCGTTTCTAGTAAATTATTCATGTTCTAGAATtaagagattgtttttttttaaatgttgttaatACTATGAAAGCCCACAAATTGAGTTTATTTCCCcaagtattatgtttttttggtttcttcacCTTTGTTCGTTCTTGACTGCTAGATCCTTCAGTGGgttcaaaaagcaaaaaatacattccattgtaaaaagtaaaacctGTACAACATGCCCATAAAAGACAGTGTTAACcttgaaataaatgcaatccAACCTC

Function

GO: NA

KEGG:

id description
K16477 NINL, NLP; ninein-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201599 lncRNA downstream 989188 14559152 ~ 14563505 (-) True G160132
TU201527 lncRNA downstream 1035408 14420937 ~ 14517285 (-) True G160080
TU201830 lncRNA upstream 19210 15594607 ~ 15595355 (-) True G160311
TU201842 lncRNA upstream 28446 15603843 ~ 15610716 (-) True G160319
TU201877 lncRNA upstream 116172 15691569 ~ 15692614 (-) False AMCG00001784
TU201932 lncRNA upstream 216599 15791996 ~ 15796358 (-) True G160387
TU201925 lncRNA upstream 253361 15828758 ~ 15829761 (-) False AMCG00001791
AMCG00001772 mRNA downstream 4249 15525698 ~ 15548444 (-) True AMCG00001772
AMCG00001771 mRNA downstream 50900 15500360 ~ 15501793 (-) False AMCG00001771
AMCG00001773 mRNA downstream 79004 15450729 ~ 15473689 (-) True AMCG00001773
AMCG00001764 mRNA downstream 103580 15438824 ~ 15449113 (-) True AMCG00001764
AMCG00001763 mRNA downstream 193674 15336021 ~ 15359019 (-) True AMCG00001763
AMCG00001777 mRNA upstream 37279 15612676 ~ 15640633 (-) True AMCG00001777
AMCG00001779 mRNA upstream 67422 15642819 ~ 15654841 (-) True AMCG00001779
AMCG00001778 mRNA upstream 79974 15655371 ~ 15677438 (-) True AMCG00001778
AMCG00001784 mRNA upstream 116186 15691583 ~ 15702400 (-) True AMCG00001784
AMCG00001783 mRNA upstream 197933 15773330 ~ 15779288 (-) True AMCG00001783
TU201759 other downstream 32054 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 50925 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 50925 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 50925 15500363 ~ 15501768 (-) False AMCG00001771
TU201597 other downstream 981766 14561488 ~ 14570927 (-) False AMCG00001756
TU201878 other upstream 118277 15693674 ~ 15702500 (-) False AMCG00001784
TU202328 other upstream 1516021 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1955469 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2284742 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2333357 17908754 ~ 17910853 (-) True G160925

Expression Profile