RNA id: AMCG00001778


Basic Information

Item Value
RNA id AMCG00001778
length 7982
RNA type mRNA
GC content 0.49
exon number 17
gene id AMCG00001778
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15655371 ~ 15677438 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAAagctgtgcatctgtgtgcaaATATCACTGTAAACAAGTCCCAACTAAACCGGCGATCCGAGCGCGTCGTTGCTGAAGTGCACAGAGAGGCTGAGCTCCACTCCGCGCCTCCGCCGTCGTGTGCCGTGGATGTGGTGCTGCAGGCCGCGCAGACGGGGACATGTTCGGCGGCTGGCCGAACCGGAGACTGAGACTTCCCAGGCCAGGCGACCCGTCGTTTACGGTCGTCCCGTCGCCCCCACCTCCCGACGAGTACTGGGACGGGCCCCCCGGTCCCCCCGGTCCCCCCGGGCCTCCGAGGTTCAATGACTACCCCGGCTCCGGCAGCGACTACAGGAGCGGCCAGATGAATGACAGAGACTTCGCTCCGCCGCCGATGGGATGTCCAGACCAGAGCGGGATGTTCTTTGGTGCGCAGCCGCAGCAGCACCCTAGGGGGATGCCAAGGCAGGACTTTCACCCGGGGCCCTGGCGCTCCCAGAAATACGATGAAGAAGAGAAATGGCAGCACCCTGCCTTCCCTAAGGCGTACGGTGGGTGCCACCCCTCAGGACCCGGCACCGCCCCCCCTGGGATGAAGCCCCCTGAATGGGGAATGCATTCCCCTCCTGCCCATCTGGGAAACCCGGGGAACGACTGGATGGGAGGCGCTCCAGATACTGAATTTCACGAACACAACCGGCTAGACTCCCCCGTTAACTGGAAGAGCAAGGAGCCAGCAAAAGACAAGAATAAAAATTCCTTACAGGCTGAGGCTTTGAAACCTGGTCGCTTTCGTGGGACTGTGTCATTTGTCAGTTCCACCTATGGGTTTATTCAGAAGGAGGACAAGAAGCAGATATTTTTCAACTTTAAAGGGTTCAGAGGAAACCCAGGAAGTCTGCATCCAGGACTGAATGTGGAGTTCACCATTGTGAAGAAAAAAGGGAAAGACAGAGCCACTGATATTAAGGTTGCCTTGGGGGGGACTGAGGAAGCTAAGTTGTTCAGCGCAGGATCAGAGCTGCTGTTCGGAGAGGACGACAGCAGTGTGACTCTACTGCTGAGAGACCGGGTGCAGTTCAACATCGCCAAGAGCCAGTCCGGAAAGCAGGACAGAGCCGTCAACATCACGGTGCTGCCAGACTCTTTCCACTACACCAAGGAGACCAGGGAAGCgGgtgtgattatgaacatgaaagACTCCACTGGGTCCGTCATGTCTGCAAACTGGAGCAACCTTTCCTTTGACGTGAGGGAGAACATGGGAGAGACCTCCCTGAATATCATGGATGAAGTGGAGTTCACTGTGGTTCCTAATACAAGTACAGGGCAGGAGAAGGCAGCGAGAATAAAGAAGCTTCCTGACGGCACTGTGTCATTTGGAAGCCAGGTCAAGCAGAGGATTGTGGAGGTCGTGGAGAAGCAGTCCGCTCTGACTGCCTCTAATGAAAAGGCTGTCGGGCCGGACCCTTTCCCTGGCCGTCTCTGGGTCAGAGTCAACAACACGGATCAGAAGCTGCCGTTTGGGGCGAGTGACGTGCAGACAGAGGTGACTATGCTGGAGGGGGATCATGTACAGTTCAACGTCGCAACAAACCGCTGCACCAAAGTGGAGAGAGCCACCAACATTGAGATCCTGCCCGACTCGTTCCACTTCACCAAGGAAGCCCGGGAAATGggtATTATAGTTGACGTGAGAGCGTCCTTTGGATTCATTAAGTGTAACCGGGACCCGAGGGTGTTCTTTCAGCTCAGTGAGGTCATGGACGAGAGCAAGCTGAGTATCTCCGAAGCGGTGGAGTTCACAGTGATTTCCGACATAGCTGATGGGCAGAGGGAGCAGGCAGTACGGATCAAGAAACTGCTCCAGAGCTCAATGACTTTGAGCTCTCAGTCCATAAGTGAAATCACTGGGGccaaagggaaagaaaagAAGAAAATGGCCTTCAAGTTCCTCAAAGACACAATAGGTGGCAATATACCCAACCTGAAGGTCAACTTCAATTCCTTTGATGAAGAAGACGGTTTCAAAGGGGAGAAccttggggggggggagtaCAGCAAACAGGACCATGAAGATGTTGACATGCCAGTGTTGGACAATGAATACCACTTGCAAAAAGAGGAGGCTCTAAAGGACATGGCTGTGGAGAGGGTCCAGATCCCAGGGTTTGAACTGCAGTCGGAAGACCTGGGGAGTGGCCCTCAGCTGCCCAAAGACACCGAGTGGAAAGTGGAGAGCAGACACCGAGGGCACAGTCACAGTGGAAGCCAGGAGCCTGGTGAAAACAGCTGTAGAAAACGCAGTCGGAGCCGCAGCAAGGAGAGGAGCAGGAACCACAGCCGGCGGCGTAGTCGGAGCCGGGAGCGCAGCGGCCATAACAGCCGGAAATGTAGTCGGAGCCGCAGCAGGGAGCGCAGCTGGAATCACGGCAGGAAACGCAGCCGGAGCAGAAGCAGGGAGAGGAGCGGGAACTGCAGCCAGAGACGCAGCCGTAGTCGGGAGCAAAGCCGCGAGCGCAGCGGCCAGTGCAACCGGAGGCGCAGCTGGAGCGGCAGCAGGGAAGACGGCAGCATTCGCCACAGGGGCCACAGCGACCGGCGCAGGAGCAGCAAGGGCAGCGGTCACAATCGGGACAAAGACAGTCAGAGTCCTATGCCCCATCCTGCAGCGCCCCAGGGTTTGGGGAGCAGTGACAGTTTCTGGGATAAGAAGCTCGTGAACAAGAAGAGGGAGCTGGAGATCCTGGAGCAGCAGATCGCACAGAAGAGAGCGCTCATAGACATGGAGCAAGGTGGTCACAAGGAGCCGGAGTCCTTCCTGCCCGTGGAGGATGAAGACTACAGGCCAAGGCTTCCTCCCGTGGAGGCCGAGAGTTACAGGCAGACCAAGGACAGCCAATCATCTGCTTTGCCTATAAAATCCATCTTGAAGAAGCGGAAGGATCCGGGTATGGAGCCGGACTTGAGCACCCAGAGAGACGTCGGCAGTAAGACGAACACTAACTTAAGCACCCAGATCGAGCGTTTCCTCAACACCCTCAACAAAGGGGCCGACTCGGGCCTTCTCTCCACGCTGCTGAGAGAAGCACGGGAGGAGGTCAGCCAGGCCGAACCCAAGAGGCCATTCCCTCGGCATCCTTTTCCCTATGAGGACCAGTACAAAGATTCATTCAGGCGGAAGTCAGAGGAGCCAGACGACTCTGAGGGGAGTCCTAATGATTTCCTGCTGCCGCATGAGAGAGCCAGTCAGGATGGCAGCGGCTTTTCCAGGATTTTAGGAATGAAACATGACTTGTCCAATTCGGAGGAAAACTGGAGAGGTTTCCTACGGGTTGATGATGAGGAAAAGTTTCTCTATGGTGAGGGAGCATCTACAGACCAGCACCAGCCTAAAACCACCCTGGCCAGGATGCAGAGCCCGGCAGACAcgaaggaggaggaagaggaggtgggggaggaagaagaagatgagACGTCAAAGTATGATAAGATCCAGGCGTTGCTCCAAACGATAGGGCTGGATCTCGGGATGGCGGAGGTAAGCAAGCTGGCGCTGAGGACTCAGGAACGCCTCTATGGGAGCAAGCGCAAATCGAAGCCTGGTTTCTCGGTCAAAGATCAGGACAGAAAAAGAGACGCCAGGGAGAGGCTGGAGAGGCAGCGCAGCCAGACCGAGTCCCCGGAGTCAGAGCGTCACCGCCCCATCTCGCCCCCCGCCCCACTCTCACACCCCACGTGTGCGGAATACACCGTCACGCAGCAGGAGAGGCGAAAAGAGATCACGGTGCTCGATCATGGTGCCAGTAAGGCATGCGAATCCTTTTCACCTTCTCCCAATACACCCTCGCCCTCCATACACGGTTTCCCTCCCACTCCGTCGGCGTATTCAGTGACACAGTACTCTCAGTATCAGATTGTGGAGCCCTCAGTTGACTACGAGAGGTATGCCACACCCTCCATGGCTCCCAGCTGGCCTCATTACCTTCCTCAATCAGCGGTGCCTCCTAATACTTTTTTCCACAGTCCAGATGGTTATCCAGTAATGGTTCCACCCCCCCTGTTTCCGAATTCGCCATCAATCGGGCCTCCTCCCTTCTCACCGGGTCTTCCCCCCGTCCCTCCACCTCTACCCATTGGACACCCGTCTGGCCTTTCCCCGTTCTCAGCTGGGCATATGCCAGTTCCTAATTATTTCCCACAGAACCCCCTAACCGGACCCCCTCAGTATCCACCTCCAGGGGGGCCTATGTTTGGTCTCCCAGAGCCGCCCCCGTCAAGTGCTCCTGTCGTCACCTCGGCGAAAGCGCAGGATAAAGGGTCCTCCAGGCGCTACTTACGGGTTATCGAGACGGTGAAAGTCAAACAGAAGGTGAAcgtcacaaacaaacaacagcccACAGTTAAAGTGGCTTCCGCACCCCAGCCGGTTAAGGCTTCCTCTGTCTCCGCGGTGAAGACGGGAAACAGCAGCGTGACGATAATATCTGAGCAGGACATCAAAGCCAAACAGAAAAAACGGctGGAACAGTTTAACGAAAGGATGAGGCAGAAGAAAGAACAGAAGGATGctcaaatgaaaagcaaagatGCAAACAAGAATTTGCAAGGTAAGACCTGCAAACAGGTAAAGAACGTTTGGATTTGCGGCCATTCACTTGTGTTTTGGGCTGAGAAGAGAGCGAAATCTCCTGAGTATGGTATGCAGTTGGGCATGGACCCAAACTGTGTCCGCTTGTGGTGGAAAGGCACACAAGGGATGGTGTGGGACCAGCTGCTTCCGATGCTCCTGCAGATGAAGGGAACTTGGCCGAATCCCGATGTTATCATCATGCACATCGGTGGCAATGACCTGGGCAAGTCAAAGACTGAGATTTTCATTTCCACCATTAAGAAGGACTTGTTGTCCATGAAAAGCATTTTCCCAGGCTGCGTGTTGGTCTGGTCTGATATCCTGCCTCGCAGCACCTGGAGGAACACGGAGAACACCGCCGCCATGGAGAACATACGCAGGCTGACCAACGAGAGGGCGAAGAAGGTCCTCGAGTCGATGGGCGGAGTGGTCTTGAGACACAACCAAATCCAAGTTGACCCTAAGTCCAGCATGTACCGGCCTGATGGGGTCCACTTGTCGGACACGGGCATTGATATGTTTAATATTGACATGCAGGATTTCCTGGAGAAATGGGAAAGCGAGGCAAAGTAAGGAGATGGTGAAGTTATACAGATAGTGGACTGCACCAGTGATGAgattgtcattgtgggttttttgtgttttgttgatgttgcaCACCTCCCTTAATTTTTAAGGCAGGGGATAGTCTAGTCTCCAGGCTGGGCGGTCAATTTGTGCACGAGTTGAATGGACGGCTAAATGCTTGAGGCCAGAAGATTGTGTTCTATGTATTCgtgtatataaaaacacacattattttattagatgAGAAGATCTATAACTCTTCTGTATTGTTTAAAGTTGGAagtgtacttttgtttgtaattaaaataaacgtTTCATTTCTCAATATTGGTGTCATTGGGTGCTTATTCACTGATTCGCTGCTTTAAGTGATGAATAATTAGCTTGTTCTCATTTGATGATGCTCTTCGGATTCTGTTGCTTTTTGCCGCACAAAAAACTGCGcctgtattgttgttttttggggtgGGCATTTTAAGACGTGTATCTTGTTAAGCGCCGACCAGTGTTAAAGcccttgttttatatattttgatgagGTCTAAACattggcatttttattttatttggtttaggtattttcttatattgtaatacaaatgtgtgctATGAACCAAAGCCAGGGAGAGCAAAGCATAACTGGAGGATAGAGACCTTCAGTTATTATCAGTGATGTAGCACAGGCACATTGGCAGGTTGGTAGGGGCATACTAAACCTATCGTGATCGGAGAAGGCGAGGGATTCGGGAGTGGCAGTGTAGGAAGGTAGTCGCTTGACAGTTTGCTAATTTGCCACAGGCCGGTAAGCTGTAAGGTACATGTGAGGTGGGAAATAAATTAACCGTAATTGCTTAAAAAGAAATAATTGCCAGGGATGATGGATTAGCCCAGATGATGTTAAACTGCACCCGTCTCGGCTTTAACAAATTTTTATCATTAACAACATCAATTGACATGCCAGAGAGCATCTGTTAGCTTGCCAAATGGTGGTCACTACTTTCTCCCATCTCCAGGTGATCTTGAAGACTGTTAGATTGCTCTTTCCAGGATGAATCCAAATCATTCGTACAGGTTGGCACCACTTCTCGTACGGATAAATCACAGATCCTACAGCGTGCAGGACCGAAGAAGGCTGCTACAGAAGCGGATTggacaaaaacatgaatgttcGGGTTCGTCTGTGAAGAAAAGGGACTGATTTGGCTGTACAGCATCTGATGCTTTGGCTTAGAAAGACAGTTTGGAGGACATCTATATGAATGTCTTTTTGCACGACAAAACGAATATCTAGTTGCCATTGGCAGCTTGATGGAGTGCTTCTGAACAACAGCAGATTGggatttttacaatattttgaaaacattttggataTTTGACCCTTGCATGTATAGtcaatgtaaatgtttccaTATCAAAGCTTTGTAAATTAAGATAGTATTCAattatattgttgttgctggttattttataactgtttaattgtattctgtatttgttttgcgaAGAATGTTTCAAATGCTGTTATACTTGTTTTTACCTTATTGTATAAAATCAATGTCTACATGCTTTTGCTCTATATTGGTTGTCTTTGGGATGGGAcaattgttgtctttttttgttggtttaaatGTAACCCCCTCAAGACTACACAATTAGATGTTGACATATTGGGGAATGTCTAAggccacagaaaaacaaaatgtttttaattatgttatgtCATGTAAAAAATCCAATTTTTCTTTGGCACCCACAGCTGTGgagtctgtttcctgtttctgtatttcagttgTGGGTGTTACAGATTACCTGCTAACACTACACTGAACCGtcagtttagaaaaaaatgtgattcaAGTTAACATCTTGTACCAAGTCATTCTTGGGTGAAATAAAATACTAGGTCTGGTATATTCTTGAGTTACTGCTCTTTTTATCCCATAGACTAAGTATGAATGAGAAGAAGCCTCTTCATCCGACTTAATTATAAAGTGGCAATGTGGCATTGGATATACTTAGGCCAAGGGAATGCAGATCTCCTGTAACATTGCTTACATCAGCTCACCAATCCCTGCTAATCCACTGACATAATCCACCACTTAATTTAACTGGGTGATGGTTTTCACTGTTGATGGTttatctgcaaaataaacaaagttcATTTACCTCTCCTGCATGCCAGTCAGTTGGTTTCTTTGTGGTTAAGGTTCCCTCAGATGTAGGGTAAGTTTTCTTATTTCAATCATTTAAGTTCTACTACAAAATGTCAGGTACTAAATTGCACATCAGTGCTCTAGTATTGATGCAACAAAGTCACAGGTAAGCTTAAATACCCAAGTTCTGTTTAGAGATCTGTGTAGTAGGTATATGCACATAACTGCAATAGTTTAGAGTGCTGCATATGTAAACATCAAGATGCCTGgtaactttttaaagttttttatatatataaatacaggcTTTATTGAAGTGTATTGCATGTTTGTTAAATGGAGCAGCTAGTTTAATTTTGgattcttattttaattgtagcaGCGAGTGTTTTAGGTACCAGTACTAAAACTGGTTGTGTGTGAATGTACTTTCTTATGTAGGGCAAGAAGGCCTGTATCCTGccttaaataaatgtagacTGAATTCAGtcactttaattgttttttcatctctgtAGGTTACATTTATCTTCAGCTCAACAGTTTTAACTGCTTCAACACTATGCAGATTTCCATGTACCCCAAGgtcagttttttgtgtgttttataaatgttattctttaaataaagtcAAATTTATTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201842 lncRNA downstream 44655 15603843 ~ 15610716 (-) True G160319
TU201830 lncRNA downstream 60016 15594607 ~ 15595355 (-) True G160311
TU201599 lncRNA downstream 1091866 14559152 ~ 14563505 (-) True G160132
TU201543 lncRNA downstream 1161722 14491898 ~ 14493649 (-) True G160094
TU201534 lncRNA downstream 1175012 14474242 ~ 14480359 (-) True G160085
TU201877 lncRNA upstream 14131 15691569 ~ 15692614 (-) False AMCG00001784
TU201932 lncRNA upstream 114558 15791996 ~ 15796358 (-) True G160387
TU201925 lncRNA upstream 151320 15828758 ~ 15829761 (-) False AMCG00001791
TU202118 lncRNA upstream 556977 16234415 ~ 16235803 (-) True G160538
TU202128 lncRNA upstream 637889 16315327 ~ 16315563 (-) True G160548
AMCG00001779 mRNA downstream 530 15642819 ~ 15654841 (-) True AMCG00001779
AMCG00001777 mRNA downstream 14738 15612676 ~ 15640633 (-) True AMCG00001777
AMCG00001774 mRNA downstream 79974 15552693 ~ 15575397 (-) True AMCG00001774
AMCG00001772 mRNA downstream 106927 15525698 ~ 15548444 (-) True AMCG00001772
AMCG00001771 mRNA downstream 153578 15500360 ~ 15501793 (-) False AMCG00001771
AMCG00001784 mRNA upstream 14145 15691583 ~ 15702400 (-) True AMCG00001784
AMCG00001783 mRNA upstream 95892 15773330 ~ 15779288 (-) True AMCG00001783
AMCG00001792 mRNA upstream 103780 15781218 ~ 15784155 (-) True AMCG00001792
AMCG00001789 mRNA upstream 121322 15798760 ~ 15817684 (-) True AMCG00001789
AMCG00001788 mRNA upstream 140845 15818283 ~ 15827775 (-) True AMCG00001788
TU201759 other downstream 134732 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 153603 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 153603 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 153603 15500363 ~ 15501768 (-) False AMCG00001771
TU201597 other downstream 1084444 14561488 ~ 14570927 (-) False AMCG00001756
TU201878 other upstream 16236 15693674 ~ 15702500 (-) False AMCG00001784
TU202328 other upstream 1413980 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1853428 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2182701 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2231316 17908754 ~ 17910853 (-) True G160925

Expression Profile