RNA id: AMCG00001780


Basic Information

Item Value
RNA id AMCG00001780
length 7712
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00001780
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15719860 ~ 15769808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGATGAGGTGTCAAAAGCCGAAGGAGAAGTCGTCTCTTTCCACTGCGCTGGCTGATGTCCCGGAGGTCATGCAAGCCGTCTGCCGCGTCATGTGGGAGTCAGTCAGGGAACGACTGGAGCCTCTTTGCAGGAGCCAGGAGATTCTCGGCTCGGGTCCCGTGGAGCCAGTCTCAGAGTTGCACTTCACGTCTGGGCGGTTCCATGGTCTTCTCTTTGAAAACCTTCGGCGGTCTTGGGCTCGCTCGCTGTTGCGTGGGGAGGCCTGCAACAGAATACCTGCCTGGACACCTTTGGATGAAGACATAGCTGGATCACCTCAGATTTTTAgGTTGCCGCGTGGGACTAACGGAGGACAGTGGCCCGAGATGACGAGCGCTGCTCCCGTGAGGAAGCCTTACCGCAAAGCGCCGCCCCAGCACCGGGAGGTCCGGCATGACCTGCCCGTGTTCAGGGACGACCTGGGCGCCACCATGGGCCTGCCGCAGCCGGAACCCTGCCAGGAAACATTATCGGACACAGACCGGATCAAGATCCTGCAGCAGCAGAACGAGGACCTTCGCCGCAGACTCACCTACACCACACACAAGATGGAGGCCATGGAGTCGGAGCTTGAGTCCAGCCGGCACTTCATGCAGGCGGAGCTGGGCCGCAGCAAGGACGACCTGGAGAAGATGAAGGACAAGTTCCGCAGGCTGCAGAACAGCTACACCGCCTCCCAGAGAGCCAATCAAGACCTGGAGGAGAAGCTCCATGCTCTGCTAAGAAAAGTGGAGAGAGATAAGAAGACCATGGACCAAGAGATAGTAGAACTCACCAACAAGCTACTGGATGCTAAAAACACCATCGATAAACTGGAGGAACTGAATCTTCCCTACGAGTTGCAGGACATGGTTAACAAGCACCTGAAAACCAGTCTCCCAGACTCTCCTTGTGCCCAGCAGGACTCTGCCCAGAGTCTGAGTCCCGCCGACGTGGTGCCCACTGCCGTCATCGCCCGGGTGCTGGAGAAACCGGAGCCGCTGGTCCTGAACTCAGCTCAGTCCAGCAGCAGTGCTGGGCGGCCTGTGGCGGAGGATGTCTTTGTGCATGTTGACATGACTGGGCCTCAAGCGGAGGGTGCTGGGCCCGGCAGAGAGAATGGTGGCGGGGGGGCAGCGGCACAACCGGGCACCCAGCAGCACAATGGCACGTGCCGGAGGCAGAACAGCTTGGATGGCCAGTCTGGGGAGGAGGGTGGCAACGGTTCAGCACCGCCCTCCTTTGAGAAGTTAAATCCTTACCCCACACCCCCACCGCCCCACCCTCTGTACCCCGGTCGCAAGGTGATCGAGTTCTCCACGGACGACAAGGTGAAGATCCCCAAGAACAGCCCCCTGCCCAACTGCACCTATGCCACCCGGCAGGCCATCTCCCTCAGCCTGGTGCAGAGCGAGGAGGAAGGAAGCGACCGGCAAAGGACTGTGCCCAACAGCCCAGCCGTGTCCGAGGGCGGTTGGAGATCGGGGGCCTCATCCTCCTCGGGTGGCCGTGCACATGGGCTTCCGCCACCAGATGTGGGCGACCTCCTCTCTACCCAGTCCAGCCCTTTCAGCAGCCCGCCTCAAGCCCCCAGCGACTTTGCGAGCTCGGGCAGCTCTGAGGAGGACCTGCTGGCCAACTGGCAGCGTATGTTTGTGGAGAAGGTGGCCCCCGCGTCTGAGGGAACCCTGGTCCACCGCACCTCTTTCAGCAGCGAGACGGTCGGGGACCTGCAGAGGAGTCGTACCGGGAAGACGCCAGCAGGGAGAGGCCTGGGCAGGGGGGAGCAGCACGGCGCCTATTCCGACGGCGAGGAATCGTCCCCTCAGAGTTGGACGGCCAGCCGAGAGTCCAGTCTGGACACAGACAACAGCAGCGCCGAGTCCCGGGTCAGGAAAGGCCATTACGGCAGTGACTTCTCCCAGGAGGAGAGCGAGAAGCTGCTGATGGCCCTGGATGTTCAGGACGATGGGGGCAGCTGTGACACCACCATCGCCGTGGCCGCCACCTCGGCCACCATCTCGGCCACCGCAAGCCCTGCCGTAAAGCGCAAGGAGTTTGTGGACGTGGGGTCGGCTGGGAGCTCCATGGAGGAGCGAGATGTCCTGCCCCAGGATTTCCCCATCATTACTCCCAGGGTCCTGGCAGGACTGGAGGACTTTGTGGAGAAACCCCCATCCCTCCACCAGACTGGCACCAGTACCTCGTCCACCAGGCCTCAGAAAAGCCCCAAAAGGATGGGGGTCCACCACCTGCACCGCAAAGACAGCCTGACCCGGGCACAGGAGCATGGCAATCTCCTGGATTAAATGGGGGCAGTAGGCTGGGGGTGCTGGGGGTTTCTCCTTTTGGTACtgctctttttgtgtgtgttgtcacaGGGCTTAGGTGAGGTTTATGGAGGGAGGCAGGAAAGAGATTATCAATAGGTTGTCCACATTAATTGTTGTCGGTCTAAAATTGTAATTCTTTTGAGTCTTTCTTTAAGCAGCATTATTTTATCCTGCTGGAGCGGAGTGCACAATAGTTCACACAATGTGGAGAAGTAGATTCTGCTTTGGTCTTGAGGAAAGCAAGGTTTTCCTGCTTACGGTGTGCAGTTCTCCAGGTTGTAGAGCATGTTTCAAGTGTCCTATAAGGTTTAATTCTAAAATCAAATTCTCAAGGCTTGTTCAGACGAGACGCGTGAGAGCTTTGGTGAATTCTTTACCCCAGGATATAGCCACGCCTCTGTTCTTTCCTCAAGTACCATCcagtgtgtgagggagagggagagggggggttTCTGTGAAGCATATGATGTTCCCAGATGCCTCGGTCATGTTAGTCAACTTGAGGCCGTGTCTCTGTGCAGCCAGCTTTGAAGTTTAAAGAATCGGTGCCGCCCACCCTCTCGTTCACTTGGAGtgcctgtcctctctctccgtCTGGGGCTTGACAGGTCCCGTAAGATGTCAGGCTACCTGTCCAAGGAGCCCGTTTCATTGTATAATCTTTAGCTGTGTGTCTGCGTTTATAATTCATGTTGCAGAACACGTGCCCTGCCCCATGAAGTACAGGAACAagcaaattatgcatttttgtcATGAATGCTTCCTCCACATAATTTGCTTCAATCTAATCACTGCACTTTGAGTTAATACTGACTGTGTGTGCAGGTTTGAACAATATGCTTTTTCAGCTGAAGTATTGGGCCTGGCTGTCTGTTTTGGCAATGATTGCCATTCATTAAAGTAATTTGTAGTAATTTTGGGCAGTTCAAAGACACCACAAAGCTATGAAGATCGTTCTTGTCATGTTTTATAAGGgtggaagaaatacaaaataaaacaacttatttttataattgccTTTTGTAAGTTTCTAGATCcaataaagtttaaaatataactcCGAATCTAAGTATTACAAGTATCAGGCTTGTGTAACTTGTCTAatcagcatttatttaatccaAATGTGCAACTGAAGCAGTTCGTGCACAATGGATGTAACATTAGTtaatcttgattttgttttaaagagatttATTCGTGCAAGTCTATATATTGTCTTTTGACTTGCGTGCGTGTCTGGAAATCCATCATTCCTATTCCTCTGAAACTACCATGTGTAATTTAGCttttctaatttttattttaaagccggAGAATTATAGTAAGTGTTACCTAGAGGCCAGATGTGCagagacaagaaaaataaaagagctCTCTCTGTTCCCGGTAGAGAGAACAGTGCACTTGTATTAAAAATGGATTCCACCGCTGCATTTAAGTAaatcagaagaaacaaaaacacaaaaaaggttGATACGTTTGTCACAATTGAGCTTTTTCCAGTATTAACTGGTGCATAGCTTTAAAGACACCTTTCTTCTTTCTGGCATCCTGTGTCACATACTCTGTGGTCTCAGGCAAATTGGggggaggaagaaaaataaaatcctacaGTATATGCTAAAGATTGGTGCTGATAGGGATTTTAGAACTGCCAACACCAGTAGATCGGAGATGCATCCTCAGAGTGAAACCTCcgaatcattttaaaaggtggGGTTGAAAGAGTTCATAATTGTGATCTTGTGATTTGatcagattaaatgaaaacatcacGAGGGATAGAGAGCTGACCCGTAGAATGATATTGTCCCCTTGATCGAAGAGGGCTGCTTCACAGTATTACACCGCTTCAGGGCTTCCTGCGGTTGTGCgtttcttcctctcctctgtATTGAATTCACTCCCTAGCCTCCTGCCTGTGCCTGGTCTATTCCTCTCTGTTGTGTACGCAGAGGGGAGAGGATACAATAGGAGTCGTGTGCAAGATGGGGTGGCCCGGGTCTCAGGCGCTATTCTTGGCTCACAGAGTGGGAAAGGTTTCTGAGTTCAACCATGATGGCATTCAGTTTCTCTGCCAGCTGCCAGTTATGACGCACGGTCTGATTTGGTAGAGAAGGTTGTTTCTCCTAGATGCCAATCAAGGACATTATTGAGTGTGTGGTGCTAGGGTGAAGACCAGTTTTCTTAAAGTACAGACTTTAACGTTAACCATAAAGACTAGTCATAAATGAATGGGAGGCTGGAGGACGAACGTAGTCATTTCAtgctcatgttttattttatttcagaaaatgtgcctTTCCCCTTTTTACCTATCTGAAGGTTTTACCCGAAGGGGCCATCAgattcatgaaaacaaaaccctgtACGTTATTTCTGTCCTCATTAAACTTTTACTCAACAGTAAATTTACACTTGCATCTGGCTCAGGGCAGTTGTTAATTTTATTGTACCGTGCTTTCTTCTGAAGCATACTCTCCATGGATGTAGCACTGCAGATGTGCAATTTGTATGGTTTAAATTGAGAATTCAACACTTTACCTGATCAGGAATGTAATCCTTATTATTGTagcattaattatatttttattcttctttttgaTCTTTGCATACCatctatgtttatatatgtacctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattgtataggatttcaagtttgttttacttttcattttgctttgatttttgatttaacCTTTAATAATGGGATCTATAGAAGTGATGTCTGCTCACTTAAAGGATCGTTGTTCTTCATGTAGTGgattgtgtgtgtcagtgcgttACTGTAGCCAGACGATTGTACAATTCCAGTTGTGATAAACCTCGACACCACCTCATGTCTCCTGAACTCAAGGATCACTTAAGTGACATTCACAACGGTGCTGGTGTTGGGCATGAAAGAGATGGCACAATGACCATTTTTGTCCTGATATTcagtggtatatatatatatatatatatatgttgtttttaagttattGTAGACTACTGGATATGAcaattgtttcctgttttttctcATTCCTTTTTAGTTGGCAACCTGTTCCCAGATTTACAGTCTTAACCTACACCAATGGCTCTCCCCACATTTCCTCATTTCTGTAACATGCTAGTTCAATCCGTGCTTGTTTCAGTTATGTAATAACATGCACAGATACATATATGTATCAGTAGAATTATTTTCTAGACGGTTTGGGAGTGCTAAATGAGGGCATGTGGAATTGAGTCATTTTTTCGCATGTGAAGAAGCCCATGCTCCACAGATTTgtttgtgtgggtgggtgtgtgtgagagagtggcCACACTTGAGTCTTCTGCAGAGAGCATGCTGGGATAGTGGTGGAAGTTCAAAGGGTGACATTACCCGgggcaaaacaaataacagctTTTAgggaattattttctttgtccaACATCCAAGAGTTAGCTGAAATGCACTATCCTTTCTCACGTATTAGGACGCCGCTTCCTGGCGATTGATATTCATCTTCTGCCCACATAACCTCTGAGAGGTGATTAAGCCTCTTGATAGATCGGCAGAGGAAATGGGGAATTTTAGAGAGAAGGTAAAAGATGGTCGTATTTAAGGCAGCCTCTCTTCCTTGTGGGGCGCGGGTCATTTGTCAGGGTTTGAAAGACATTACTTTCCATATGGCTCTACATCATCTGCTTGAACAGCACTCCTTGCCTTTAATTATTCAACAAAATTGGCTTCAGCATGACAGGGCGGATGTTGGGTCAAGATTATAAGAGTTCTGGGCCCCTGCGATATAcgttttttgtattgctctttcaTTATACATAAAGGTGCTTCTTATTGTCCATAATTGATAGATGTAGAACTGCCTTCcagaataaataatgcatccctttattacaTTCTGAAATAGGCTTCCTGGGTTTCTCACCCGAAAGTGAGTAATTTGTCACACTCGTATGCACGTGGAAGCTGCCGTATAAATAATTACCTTGGAAGATGTTCCCAAGCCACGCTACCAAGCAGCTTTCGTGGGGAAATGGCCGAGAAACCCTCGTCTTTTATAAATAGAATGAAGTCGCATCTGTCTCTTGCAACTTTTATGGAACATTTCGTAACCATGAATGGATCTGTATTCCCCCAGTGGTGTCTGACAGCCAGCCCTTTCCTGGGACGGAGTGAAATCAGTGAGACAACTTAGCCTTATTCAGGAATAGGTAATATTTACTGAAGtactatatatttacatacatgcattcatacatatatacttaCTACCTCCCAAAACTATAGCACTGcgatttaaatgaaatgtttgcatttttagaCGATTAATGTTAGTGCGTTCATGtagtgtgtttctttttttttatattgtgaaatTGGGAGCTGAAGGGTTATTAATACAATTGGTTGACATTCATTCAGTATTGAGGAAACGAGGTCAAATCAAATTAGTATTATGATCCACAAACACCCTCGCCCGAATGGGTAATTGCTGTCCGCAGGTATTTGTCATTATTGATCGATGTTTTGGCCTACCCTGAACACAAGTGACCCCGGGGAACTTTACATGGCAAAATGAGAAACTGCTAATTGGTTAATTGCCCTCCGTCAGTAAAATGTTAACAATGAAGAGCATGACTGTGCTCTCAAATGAAAATTGTCTTCTCCATAACTAATCTGAGCACATACTTTCTAACTTTtctgttcttgtgtttttatgtgtgtgtgtgtttgtttcatcaCGTTTGCATTGGCTTCTCCATCGCCAGCTGCAAATACTTGTTTCTTGGTATTTAATCCTCTCTGCACTCCACCCCCTCAGTGTCTGATGAGACTAGAGGGTTGTAAAGAACTACATGTGTAATCTAGTCCGTCTGAGATGCATCCATTGGGAGATGGAGCAGGTGGAGGTGAAAATGCTAAATCAAAACGTATTAATGTAACAGTCTGCTTTGGAAGGTACTGAAGCTCCCCCACCGACCCAACACCCTTCAGGTTTGATTCCATGTCCCTCTTGTGTGCGGTCGCCTCCAAAGCGTTTCTTGGCGATATGGTGCTTTACCCATGCCGGAGAAGACGGGAACGTTTTccttgttttggtgtttttttcctccgCAGTGTCCGTTCTTCCGTTGCGTTgcgcttttatttttctaaagccGAGACTCCCGTGGTTTTTGTAGTGGCACCGTGTACAACTTTCCTccttgtttaacaaaaaaattgaaaaattaaaaaaaaaaaaaaaaaaaagttaaacctgtactaattttattttcagatttttaaactgaggatgtatattttaaaacaaataaactattttaaaaaagtaA

Function

GO: NA

KEGG:

id description
K06105 TJP4, PILT; tight junction protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201689 lncRNA upstream 302306 15402285 ~ 15417554 (+) True G160200
TU201668 lncRNA upstream 385293 15331620 ~ 15334567 (+) True AMCG00001760
TU201615 lncRNA upstream 1018404 14701134 ~ 14701456 (+) True G160144
TU201590 lncRNA upstream 1087370 14629303 ~ 14632490 (+) True G160129
TU201568 lncRNA upstream 1156491 14562854 ~ 14563369 (+) True G160116
TU201919 lncRNA downstream 58968 15828776 ~ 15829766 (+) True G160375
TU202021 lncRNA downstream 344536 16114344 ~ 16114699 (+) True G160463
TU202022 lncRNA downstream 347397 16117205 ~ 16119266 (+) True G160464
TU202122 lncRNA downstream 506998 16276806 ~ 16278054 (+) True G160542
TU202247 lncRNA downstream 1130087 16899895 ~ 16902440 (+) True G160648
AMCG00001781 mRNA upstream 29114 15679825 ~ 15690746 (+) True AMCG00001781
AMCG00001775 mRNA upstream 100742 15613012 ~ 15619118 (+) True AMCG00001775
AMCG00001776 mRNA upstream 109173 15578175 ~ 15610687 (+) True AMCG00001776
AMCG00001768 mRNA upstream 167445 15549591 ~ 15552415 (+) True AMCG00001768
AMCG00001769 mRNA upstream 194554 15502070 ~ 15525306 (+) True AMCG00001769
AMCG00001782 mRNA downstream 3871 15773679 ~ 15775502 (+) True AMCG00001782
AMCG00001787 mRNA downstream 15137 15784945 ~ 15788438 (+) True AMCG00001787
AMCG00001786 mRNA downstream 18898 15788706 ~ 15796435 (+) True AMCG00001786
AMCG00001785 mRNA downstream 29125 15798933 ~ 15803681 (+) True AMCG00001785
AMCG00001797 mRNA downstream 284715 16054523 ~ 16060416 (+) True AMCG00001797
TU201717 other upstream 280829 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 385293 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 1449670 14269615 ~ 14270190 (+) True G160026
TU201065 other upstream 3388412 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 5805196 9913308 ~ 9914664 (+) True G159174
TU202121 other downstream 467454 16237262 ~ 16295506 (+) False AMCG00001814
TU202141 other downstream 599605 16369413 ~ 16372304 (+) False AMCG00001814
TU202413 other downstream 1647543 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 2418094 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 2446767 18216575 ~ 18217138 (+) False AMCG00001883

Expression Profile