RNA id: TU201877


Basic Information

Item Value
RNA id TU201877
length 1046
lncRNA type sense_over
GC content 0.47
exon number 1
gene id AMCG00001784
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15691569 ~ 15702500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACCGCCACCCCGGCCGAGGAGGAGTGCAGGGTCAGCATCCTGCACAGCCCACCCCCCGACCTCAAGAAGAAACTCAACACGGAGGTCATGTAGCCCGAGGGGCCGCCCTGCACTCTGGGCCCACGGCGGACGCGGCAGAGGATCGgcgagtgactgtgactgttgCTGTTGTGTCGGCACCTGTAGTCAGAGACCATCCCGAGGCGGGCTTCAGGATGCGCCTCGTCTAGGGAGCTGCAGGGCGCGTCTTAAATGATGTCAGCCTCTCAGGGCCAGCTGCTTCTGTGCAGCAAGACACAACTCAGAAGAGAACGCATTGCTTTACGTTTTCACAAACCCACAAAGGGTGGAAGAGTGTTGTATTTCTGTAGAAAACAGTATAACCTCAGTCTGTCTCCAGATTAGCTGCCAGTATTTTGACAAGTTGCAATGAACTGAAGCCTGAGAAGGTGGACCTGCGATGTGCCTGATCTGAGGCAACGGCTCCTTGAATAAGATTGATCGTCTGGACTGCACTGAATATATGCAGGGCGTTTATTGATATAGATACGAAACTGTTGTGTCATTGTCACTCGTTTTTAATCGAGGGCCTGCGAATGGCCACGGAGAGATTATGGTTTACAAACCCTAAAGCACTTCctagaagaaaaaggaaaaactttGTACAGCCATCTGATTAAGACATCCTTCACATTTGTAAAGAACATGATCCTCTCAGGGAtcctaaattatttattatgtattttgtacttttgtgtattccttctttttttttttttttacaggaaatGCACATGCTAACTGTAATGTCCTGCATTGATTTCGTGTCGTATGGTTCTCTCAGCGCTGATAACAGATTACAGCTGGCAATTCGTCTCAATCCGAGACTGACGGACTGTCCAGGGCAGCGTGTTCCCATACTAACCTCCCCCACAGTCTGGAGttgtacatttcatttattcctgtaatttatttgtgaaatgtacacATGATCTGTTCTGCAAATGTGTCCTATTTTTTTATACTGAATGTGTGCATTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201842 lncRNA downstream 80853 15603843 ~ 15610716 (-) True G160319
TU201830 lncRNA downstream 96214 15594607 ~ 15595355 (-) True G160311
TU201599 lncRNA downstream 1128064 14559152 ~ 14563505 (-) True G160132
TU201543 lncRNA downstream 1197920 14491898 ~ 14493649 (-) True G160094
TU201534 lncRNA downstream 1211210 14474242 ~ 14480359 (-) True G160085
TU201932 lncRNA upstream 99382 15791996 ~ 15796358 (-) True G160387
TU201925 lncRNA upstream 136144 15828758 ~ 15829761 (-) False AMCG00001791
TU202118 lncRNA upstream 541801 16234415 ~ 16235803 (-) True G160538
TU202128 lncRNA upstream 622713 16315327 ~ 16315563 (-) True G160548
TU202225 lncRNA upstream 1124325 16816939 ~ 16817195 (-) True G160631
AMCG00001778 mRNA downstream 14131 15655371 ~ 15677438 (-) True AMCG00001778
AMCG00001779 mRNA downstream 36728 15642819 ~ 15654841 (-) True AMCG00001779
AMCG00001777 mRNA downstream 50936 15612676 ~ 15640633 (-) True AMCG00001777
AMCG00001774 mRNA downstream 116172 15552693 ~ 15575397 (-) True AMCG00001774
AMCG00001772 mRNA downstream 143125 15525698 ~ 15548444 (-) True AMCG00001772
AMCG00001783 mRNA upstream 80716 15773330 ~ 15779288 (-) True AMCG00001783
AMCG00001792 mRNA upstream 88604 15781218 ~ 15784155 (-) True AMCG00001792
AMCG00001789 mRNA upstream 106146 15798760 ~ 15817684 (-) True AMCG00001789
AMCG00001788 mRNA upstream 125669 15818283 ~ 15827775 (-) True AMCG00001788
AMCG00001791 mRNA upstream 137052 15829666 ~ 15833806 (-) True AMCG00001791
TU201759 other downstream 170930 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 189801 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 189801 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 189801 15500363 ~ 15501768 (-) False AMCG00001771
TU201597 other downstream 1120642 14561488 ~ 14570927 (-) False AMCG00001756
TU201878 other upstream 1060 15693674 ~ 15702500 (-) False AMCG00001784
TU202328 other upstream 1398804 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1838252 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2167525 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2216140 17908754 ~ 17910853 (-) True G160925

Expression Profile