RNA id: TU201925


Basic Information

Item Value
RNA id TU201925
length 1004
lncRNA type sense_over
GC content 0.41
exon number 1
gene id AMCG00001791
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15828758 ~ 15833806 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAACCAAGGCGGGCAGTTTGAGCAGTTCTTCCAGCAGGGGGGCTATCAGTACAACCAGGCTGGCTTTGGTCAGGGAAGGCACTACGCTAGTTGAGTAGAGCCGCTCGGTCATTGCAGCAGAGCTCACATTCCTGCAGACGCGGTGGAGGGGAAAACGCCTTAAAACTACAGTGTGGACGGCACCAATGATGGCTGACCATCGGATTTCTTTTGTTCTGCTCGGGGGAGAGATCTTTCATGGAATAGCTGAACCCTGAAATGGTCCTTGCACGGTGAGCGGCTGTGATCGTGCCTATGCAACCCATTTGTTCATAACTGAGATCTTGCCCAAGTCGATGTGTTCAGCTGTTCTCTTTGTGAGAGACGCCTCATTCATTCTTTTCCTTTACAATATAAACCCTAATGCCAAGGGTGAATTCCACTGTATATGACATAACCGTCTTACAAGCTGATAATAAAATGTGAGCTCGGCTGTAATAACTTAAACTGAATAGCCTTATCTTCTGGATTATTTGAATATACAGATCCAATCAAAAGTTCAGAAGTTGAGTATTTAATGCCACTAAATGTGTTGATGAGGAAAAACACTACATGCACATTCAATATACgagattaataaaacaaaacaaaaaaagtgttgtgAAATACTTGCAGTCCACCTAGTGTTACATAGTGacattcttcaaaataaatggttttTGGAATTTGCTTTAAGCATGAGTTTACATTGTTGGGTCATCTGAAATAGAAATGGATTGGtgagggggggaaacaaaagcaCTGCCATCCGGGGGAAAGGACTGTAGACACCTGGAGGTCTTCTGCCTTTGTTGCAGACAACTGCTGACTAACTGAGCTAAAGTTTTCtgtttcttaaaatgaaaagaagccAATTGAAACGATTGGCTGTTTTGTGTACATAAGTTATGTGAAGATATTGAAGACAATGCTTGAACGTGTGTCTGAATGAAAGGtgagcaataaaaaaaaagtttaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201932 lncRNA downstream 32400 15791996 ~ 15796358 (-) True G160387
TU201877 lncRNA downstream 136144 15691569 ~ 15692614 (-) False AMCG00001784
TU201842 lncRNA downstream 218042 15603843 ~ 15610716 (-) True G160319
TU201830 lncRNA downstream 233403 15594607 ~ 15595355 (-) True G160311
TU201599 lncRNA downstream 1265253 14559152 ~ 14563505 (-) True G160132
TU202118 lncRNA upstream 404654 16234415 ~ 16235803 (-) True G160538
TU202128 lncRNA upstream 485566 16315327 ~ 16315563 (-) True G160548
TU202225 lncRNA upstream 987178 16816939 ~ 16817195 (-) True G160631
TU202234 lncRNA upstream 1024892 16854653 ~ 16854957 (-) True G160640
TU202283 lncRNA upstream 1145687 16975448 ~ 16975879 (-) True G160682
AMCG00001788 mRNA downstream 983 15818283 ~ 15827775 (-) True AMCG00001788
AMCG00001789 mRNA downstream 11074 15798760 ~ 15817684 (-) True AMCG00001789
AMCG00001792 mRNA downstream 44603 15781218 ~ 15784155 (-) True AMCG00001792
AMCG00001783 mRNA downstream 49470 15773330 ~ 15779288 (-) True AMCG00001783
AMCG00001784 mRNA downstream 126358 15691583 ~ 15702400 (-) True AMCG00001784
AMCG00001790 mRNA upstream 7263 15837024 ~ 15850756 (-) True AMCG00001790
AMCG00001793 mRNA upstream 21026 15850787 ~ 15865923 (-) True AMCG00001793
AMCG00001794 mRNA upstream 49867 15879628 ~ 15936565 (-) True AMCG00001794
AMCG00001795 mRNA upstream 137342 15967103 ~ 15991258 (-) True AMCG00001795
AMCG00001796 mRNA upstream 189152 16018913 ~ 16025403 (-) True AMCG00001796
TU201878 other downstream 126258 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 308119 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 326990 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 1261657 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1701105 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2030378 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2078993 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 3006021 18835782 ~ 18850884 (-) True G161153

Expression Profile