RNA id: AMCG00001801


Basic Information

Item Value
RNA id AMCG00001801
length 1758
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00001801
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16171241 ~ 16176554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTACCTTTAGGAAGCGTCTGTACAGGAACAAGCAGAGCAGGTTTGACTGTGGACTGGAGCGTTTCCAAAGGATGTAGAGGGGATGCGCAGGGGGCGGTGCGGGACTGAGGCGCTGGTGCGCATTTCCACTCCGCTCGCAGGGGGCGCCGGGACAGACACTGCCTCTCGGGCGGATCACAGCGCGGTCAGCAGCCGGTGGActgtcctccctccctccctccctccctctctccctctctctctctctctgggagtAACCATGCTGAGGAGGTCATCCCTGTGCGGAGTGCGGCTGGCGAGGGCGCTTCACGGCAGATGCCAGCACTCCGTCGGCATTATTGGAGCGCCCTTTTCCAGAGGACAGGTGAAGGATTACGGCGACCTAAAACTTGACGATATTCCCAACGATGAGCCCTACAAGCGAGTGAAGATGCCCAAGACAGTGGGCTGTGCCAACGAGAGGCTCGCCCACGCCGTCCGCACCGTGAAGAAGGATGGGCACACCTGTTGTGtccgttttgtttgtttgctcaaCTCTGTTGCAATGTCACCCCGCAGTCTGGGGATCGGGTCGATCCTGGGACACGCAGCCGCCAATCAGGACCTTTGTGTGGTGTGGGTGGACGCCCATGCGGACATTAACACGCCGCTGACCAGCCCCACTGGCAACATCCACGGCCAGTCCGTGTCCTATCTGCTCCGGGATCTGCACTCAAAGATGCCAGTCCTGCCAGGGTTTTCCTGGGTAAAGCCCTGCATATCAGCCCAGGACATTGTGTACATTGGCCTGCGAGATCTGGACCCAGAGGAACATTATTTAGTGAAGCACCTGGGGATCAAGGCGTTCTCGATGACCGAGGTGGACCGGCTCGGGATTGGCCGGGTGATGGAGGAGACGTGTGACCACCTCTTGTCGAAGGGGGGGAGGCCGATCCACCTGAGTTATGACATTGATGCCATGGACCCCTCTGTGTCTCCTGCCACTGGAACGCCCGCGAAAGGAGGGCTGACCTACAGGGAGGGCATCTATATTGCTGAGGAGATCTGTAGGACAGGTCTGCTCTCTGCTCTGGATCTTGTGGAAGTCAATCCCAGCCTGGGGAAGACCGAGGAGGAAGTGAGGTCCACTGTGCACGCTGCGCTGGACGTGATCTTGAGTTGTTTTGGACAGACTCGGGAAGGTTCCCACCCCAGTGCCTTCCAGCTGCCCGAACCCTAAACATTCAGAGGGGAAAAATCGTCACAGTATAAACAAGCTCTTATGAAGCTTTTTTATATTgataagaaaaatgtaaactacTGAATATATTTCCTGTGGATATACCACGAATTCATAATTGTAAATGTGACAAGTTCATTATACTCacgtgtatacatatatgtgtatatattgggTACAAGCTACTATTCATTTGATTTAGACTTgattgtttattgttattttactgtGAAATTTGAAGTATCTGCTTAGAGAGGGAATTTCCCTTAATTAGCAAGAGGATAGAAGAATGGACTAGTCATGCTGTATTATAACCTCCTTAACCAAGAGGAGCCAGTAGCTTGAACATAAAGGTCATAAAATCATATACAAATTCATACACATTCTcttgtataattttatatattataatcttATATAAGACTGCATTATACTGTATAGAATTTGACACTactttttgattaattttttttttcccaaagaaaacatgtagtcttttcctctattttctattgaaataaaaacaaaatgaacaaga

Function

GO:

id name namespace
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
K01476 E3.5.3.1, rocF, arg; arginase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201925 lncRNA downstream 341480 15828758 ~ 15829761 (-) False AMCG00001791
TU201932 lncRNA downstream 374883 15791996 ~ 15796358 (-) True G160387
TU201877 lncRNA downstream 478627 15691569 ~ 15692614 (-) False AMCG00001784
TU201842 lncRNA downstream 560525 15603843 ~ 15610716 (-) True G160319
TU201830 lncRNA downstream 575886 15594607 ~ 15595355 (-) True G160311
TU202118 lncRNA upstream 57861 16234415 ~ 16235803 (-) True G160538
TU202128 lncRNA upstream 138773 16315327 ~ 16315563 (-) True G160548
TU202225 lncRNA upstream 640385 16816939 ~ 16817195 (-) True G160631
TU202234 lncRNA upstream 678099 16854653 ~ 16854957 (-) True G160640
TU202283 lncRNA upstream 798894 16975448 ~ 16975879 (-) True G160682
AMCG00001803 mRNA downstream 786 16167863 ~ 16170455 (-) True AMCG00001803
AMCG00001810 mRNA downstream 22666 16146837 ~ 16148575 (-) True AMCG00001810
AMCG00001808 mRNA downstream 50905 16115193 ~ 16120336 (-) True AMCG00001808
AMCG00001809 mRNA downstream 57128 16066284 ~ 16114113 (-) True AMCG00001809
AMCG00001798 mRNA downstream 125584 16030594 ~ 16045657 (-) True AMCG00001798
AMCG00001802 mRNA upstream 631 16177185 ~ 16197496 (-) True AMCG00001802
AMCG00001804 mRNA upstream 96774 16273328 ~ 16279392 (-) True AMCG00001804
AMCG00001816 mRNA upstream 458910 16635464 ~ 16644981 (-) True AMCG00001816
AMCG00001817 mRNA upstream 469373 16645927 ~ 16678629 (-) True AMCG00001817
AMCG00001827 mRNA upstream 547921 16724475 ~ 16732575 (-) True AMCG00001827
TU201878 other downstream 468741 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 650602 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 669473 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 914864 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1354312 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 1683585 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 1732200 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 2659228 18835782 ~ 18850884 (-) True G161153

Expression Profile