RNA id: AMCG00001811


Basic Information

Item Value
RNA id AMCG00001811
length 2996
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00001811
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16605907 ~ 16635015 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTCTTGAACTTGGACAACACCGTGGTTGACCTGGAGACCCTGCAGGCCCTCTATGAGAACCGAGCACAACAAGAGGAGATGGACAAAATCGAAAAGCATGTGAAGTCTTCTAAAGAGAAAGAACATTCAAAACCACTGGATAAACCAGAACAATTCCTCTTTGAACTGTCGCAAATCCCCAATTTCTCAGCCAGGGTGTTCTGCATCCTGTTTCAGTCGTCTTTCACAGAATGCATATCCTCAATCCTCCGCAAGCTCGAGATCATTCAGAAAGTCTGCTCGACATTGCAGAGCAGTTCAGGGGTAATGAAGGTCCTCGGGCTGGTCCTCGCTTTTGGCAATTTCATGAACGGTGGGAACAGGACGCGAGGGCAAGCGGACGGCTTTGCGCTGGATATCCTGCCGAAGCTCAAGGACGTGAAAAGCAGTGACAGCAGTCGAAGCCTCCTGTCATACATCGTCGCGTACTATCTAAGACACTTCGACGAgGACGCGGGCCGAGAGAGCTGCATCTtccctctccccgagccccagGACCTCTTCCAGGCGTCTCAGATGAAGTTTGAAGATTTTCAAAAGGATTTGCGCAAGCTGAGGAAAGACCTGAATGCCTGCACGACCGAGACGGAGAAGGTCTGCCGCGTCTCGTCCGAAGATCACCTGCAGCCCTTCAAAGACAAAATGGAGGAATTCATCGGCCAAGCAAAAATCGATCTGGAGGCGCAGGAGATCCAGCTGGCCGAAACTCACAAAAGcttCTTGGAATTAGCCGTACTCTTCTCCGTCAAAGCTAAAATGGGAGAAAAGGAGGTTTCGCCAAACACGTTCTTCTCCCTGTGGCACGAGTTCTGCACCGACTTCAAGGACTTGTGGAAGAAAGAGAACAAGTTGATCCTACAAGAGAGactGCGGGAAGCTGAGGAGTGTTTCAGACAAGCGAAAGAAAAGGCTTCATACAACGTCCGGCCCAAGCATGACTCGGGAATAaaagcAAAGCTGAGCATGAAAATCTGAAGGGCTGATGGGAAGACTAGTTTGATGTCCTGCAGAGTGATGGACACACCAGGATAACGAAAGAAGAGGGGGAGACAGGGAAAAAGATATTCAACTATTAAAGAATTCGGCACTTGGgctttttatgattttttattttttctttaagaagCACGATCTTCCTGTCCTATTCGTTTGGACAAGGTagagctgttttgtttttgtaagtcGGACACACAGATCCTCTCCTGAAGACGGGCGTCACCTGGGATGACCTGGGCGTCCGCGGTGGCGCCGGTACTCCCCGACTCTCGCTGAAACAGACGGATTACATAATATTGCGTTAGGCGCTCGCTGGCCTGTCGGTACAGTTGCTCTCCTGATGGAGCGCCTGCccggttctctctctctctctctctctctctctctctcgttgaACTCGCTCGCCTGTTTCAGACACCTGCAAAACGACTCGTACTCGTCCGACCTCTCCGATCTCGGTGTCGTGGTGCATCATGGGATTCGTAAGCAACAGAGACGCGGGCACCTGTCTCTCGAGAACATATCTGTTTCACCtctgtgtatatgtaaatatgaagACTCAATGAATATCACATCTGGGAGAGGACGAGAGCGCCGTGTCCAGACGATGGCAGTGAATCTTATGATCTCAGTGACGGTAGCGTCATTTTTAGGCCGGTGGGGAAATGTAACCGCAGTGTATTCCACTGTCTCCGGTGCCCAGTCTGCAGAGCTGCTACATCCCCGCTAAACCAAGCTGTACAAGCAAATGgagaaaaccaacaaacaaaacagactgaATTATAAATGCAGGTCATTTCCGTATAAATGTACAAGATGGTCTTAAAACTGTTCTCTGAGAATAAACCGATAGGATATTCTTCCCCTGTGCTGAACTGAATATCTTCATGAGGTCAGTTCTCACAatggtatttatttgtgttcatatGTAAAGCTTTTCAATTGAAAGTGGCTTTCAGTAGCTGTTGTAATTCCCTCATGGTCCCTGTTGATAGCGAATCATTGTCCAACTGCACTTTGAGACCTCAGTTCAGGTTAGAACCCGTTCAGTCAAAATGTTTTGGGTGTTAAAGCTCCTACAAAACATCAAGAGGTATGTTTCAGAGGCTTTGACATGACAGCGCTTCCCTAACTGTGTAGCAATTAATTCGTCTGCTATAGCTCTGCAGTGAAGAGATGAAAAATTAACGAATTGATATTTGTCACAGTTTGTCAGAGGGCTGTGTTTGGAGGGGCCATTGAAACTCAGAAAATAGGAATTCAATTCGTTACCTGTCACCGGTTACCCACCTGTCACGTGACTCTGAGTTTGGACATGTTGGTTTAATATGAGATCTAAACCGGCCAAATCAGtgcataaaaaaaagttttaaattatgaaGAAAACTATTGTGCACACTCTTGACAGATCATCAGGAATATTGACCGAACATTTGAGCTTTCTCTTTTTCGTTTCTAAATTTTAAGATTTTCGATGTACATGAAATGGTTAattggttaaaaaatatatatattttgaaaaattgtCAGACCGAATGAAGAAACTTAACTATATTGTCGCCCATGGGGGGGGATCAAATACACTGGGAAATCATGTTTATATTTGAGCTTCAAGGCGTTGAGtgggattttaaaatgcattctctATTTCTTTGCAAGTGTCACGATTCTCTGTAAATTAAAGACCTTCTGGAAGAACTATGAATTACATTGACTTGCAAATGACTTAACTGGGTTacttaagttattttaattgctatactttgattttatgtatgtaaagtAGTATTAACATCTTTCTGTACCTAACCTGTCCCTTGATTTTTACTCTTCTTAGCATGTTGGTTCTGTGCCcaatgtgtgtaattgtactATTCTGGAGTTCTTCTACAAGACGTATCACCACGTGCAATATCATTAAAAGTGTTTCtaattagtctttttttttttttttccca

Function

GO: NA

KEGG:

id description
K02184 FMN2; formin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202122 lncRNA upstream 327853 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 486641 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 491208 16114344 ~ 16114699 (+) True G160463
TU201919 lncRNA upstream 776141 15828776 ~ 15829766 (+) True G160375
TU201689 lncRNA upstream 1188353 15402285 ~ 15417554 (+) True G160200
TU202247 lncRNA downstream 264880 16899895 ~ 16902440 (+) True G160648
TU202248 lncRNA downstream 270234 16905249 ~ 16910033 (+) True G160649
TU202349 lncRNA downstream 544702 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 773242 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 1163184 17798199 ~ 17804178 (+) True G160869
AMCG00001812 mRNA upstream 18781 16568842 ~ 16587126 (+) True AMCG00001812
AMCG00001813 mRNA upstream 46353 16554980 ~ 16559554 (+) True AMCG00001813
AMCG00001814 mRNA upstream 228047 16293826 ~ 16377860 (+) True AMCG00001814
AMCG00001799 mRNA upstream 369905 16222744 ~ 16236002 (+) True AMCG00001799
AMCG00001800 mRNA upstream 383633 16199148 ~ 16222274 (+) True AMCG00001800
AMCG00001815 mRNA downstream 127431 16762446 ~ 16770159 (+) True AMCG00001815
AMCG00001825 mRNA downstream 181961 16816976 ~ 16821826 (+) True AMCG00001825
AMCG00001824 mRNA downstream 230475 16865490 ~ 16869319 (+) True AMCG00001824
AMCG00001820 mRNA downstream 235381 16870396 ~ 16897808 (+) True AMCG00001820
AMCG00001818 mRNA downstream 311509 16946524 ~ 16951511 (+) True AMCG00001818
TU202141 other upstream 233603 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 310401 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1166876 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1271340 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2335717 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 782336 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1552887 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1581560 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 2035267 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 2264322 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile