RNA id: TU202121


Basic Information

Item Value
RNA id TU202121
length 238
RNA type TUCP
GC content 0.60
exon number 3
gene id AMCG00001814
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16237262 ~ 16377860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACCGGCGACCATGGCTGACGGCGGGGAAGGCGAGGACGAGATCCAGTTCCTCCGCACGGATGATGAGGTCGTGCTGCAGTGCTCCGCTATTGTCCACAAGGAACAACAGAAGCTGTGCCTGGCGGCGGAGGGCTTTGGAAACAGACTTTGCTTCCTGGAATCCACCTCAAATTCCAAGAATGTCCCCCCCGACCTGTCGATCTGCACCTTCGTCCTGGAGCAGTCTCTGTCGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202022 lncRNA upstream 117996 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 122563 16114344 ~ 16114699 (+) True G160463
TU201919 lncRNA upstream 407496 15828776 ~ 15829766 (+) True G160375
TU201689 lncRNA upstream 819708 15402285 ~ 15417554 (+) True G160200
TU201668 lncRNA upstream 902695 15331620 ~ 15334567 (+) True AMCG00001760
TU202247 lncRNA downstream 604389 16899895 ~ 16902440 (+) True G160648
TU202248 lncRNA downstream 609743 16905249 ~ 16910033 (+) True G160649
TU202349 lncRNA downstream 884211 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 1112751 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 1502693 17798199 ~ 17804178 (+) True G160869
AMCG00001799 mRNA upstream 1260 16222744 ~ 16236002 (+) True AMCG00001799
AMCG00001800 mRNA upstream 14988 16199148 ~ 16222274 (+) True AMCG00001800
AMCG00001807 mRNA upstream 69638 16160544 ~ 16167624 (+) True AMCG00001807
AMCG00001805 mRNA upstream 90460 16132685 ~ 16146802 (+) True AMCG00001805
AMCG00001806 mRNA upstream 106981 16123040 ~ 16130281 (+) True AMCG00001806
AMCG00001813 mRNA downstream 259474 16554980 ~ 16559554 (+) True AMCG00001813
AMCG00001812 mRNA downstream 273336 16568842 ~ 16587126 (+) True AMCG00001812
AMCG00001811 mRNA downstream 310401 16605907 ~ 16635015 (+) True AMCG00001811
AMCG00001815 mRNA downstream 466940 16762446 ~ 16770159 (+) True AMCG00001815
AMCG00001825 mRNA downstream 521470 16816976 ~ 16821826 (+) True AMCG00001825
TU201717 other upstream 798231 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 902695 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 1967072 14269615 ~ 14270190 (+) True G160026
TU201065 other upstream 3905814 12329988 ~ 12331448 (+) True AMCG00001691
TU200393 other upstream 6322598 9913308 ~ 9914664 (+) True G159174
TU202141 other downstream 73907 16369413 ~ 16372304 (+) False AMCG00001814
TU202413 other downstream 1121845 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1892396 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1921069 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 2374776 18670282 ~ 18672421 (+) False AMCG00001880

Expression Profile