RNA id: AMCG00001815


Basic Information

Item Value
RNA id AMCG00001815
length 1842
RNA type mRNA
GC content 0.47
exon number 13
gene id AMCG00001815
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16762446 ~ 16770159 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTGAGAGAAGCCCAGTCCAGGAAACTGCTGTGAAACTCTTCACAACTACACCGAGTCACATCCCAAATCAAGAGCGACTCTCCAGCCCCTGCCATGGACCACCCAGCACAGCAGACTGCAGTCAAAGTGGCCGTAGTCGGAGGTGGTTTGgTTGGTGCCTTAAATGCCTGCTTCTTCGCAAAAAGAGGTTTTCATGTGGAGCTTTATGAAGCTAGAgaagATATCCGAAGAGCTAACATGGTTAAAGGCAGAAGCATTAATCTGGCACTTTCTCACAGAGGCCGAGAAGCTTTGAAAGCTGTGGGGATGGAAGAAAAGATTGTGTCCACAGGGATCCCAATGCACGGGAGGATGATACACTCTCTGAATGGGAAGAGGTCCCCCATCTACTATGGCAAGAAAGGACAGtacaTCCTGTCGGTTGACAGAGCTAACCTAAATAAGGAACTATTGTCAGcGGCTGAGGCTTTTCCTAATGCCAAAATGAGCTTTGGACACAAACTACTGGACTGCAATCTGGAATCGGGGATGATGACATTCCTTAGGACAGACGGCTCCACGGAGCAGGCAGTGAGTGACCTCATCGTGGGCTGTGATGGGGCCTTTTCTGCTGTCAGGAAACGGTTTATGCGTCAAAACCGTTTCACTTACAGCCAGACATACATTCCCCATGGGTACATGGAACTCACCATACCCCCAATAAATGGTGAATTTGCCATGGAGCAAAATTATCTCCACATTTGGCCAAGAAACACATTCATGATGATTGCTCTACCTAACTTAGACAAGACGTTTACCTGCACCCTGTTCATGCCATTCGAGGAGTTTGAGAAAATCACTACGGCCAGCCAAGTCCTGGAATTCTTCCAGAGATGCTTCCCAGACGCCATTCCTCTCATCGGAGTAGAGGCTCTGAAAACGGATTACTTCCGATTGCCAGCCCAGGCGTTGGTGTCCGTCAAGTGCTCCACGTATCACATGGGAAACAAGTGCTTGCTGATGGGAGACGCCGCGCATGCCGTGGTTCCCTTCTATGGGCAGGGGATGAATGCTATGCGCGCTCATGTGAACTCCAAATGGTTCCTGTTCCGAAAATACCTGGACATGTTCCTTCATTATATGATGCCAAATACTATCATCCCTTTATACACTATGGTCACATTCACCCGAATCAGATACCATGAGACAGTCAAGCAGTGGCAGTGGCAGAACAAGGTGATCAACCGAGGACTGTTTCTGTGTGGTGTTTCATCTGTAATAGGTGGAGCTTACCTGCTCTTCCGGTACAATCCCTACATACCTAGCGTGCCTCTGGATCAGTTGTGGAGCTGGGCCCAGAGCCTGAAGCTGCTCTGACATGGTCTTGTCCTTTTGTCCTTTCTTTGTATATGTTATGGAAACACTAATAACCCTGTATGTAACTGACtgagaattttaattaaattgaattctgACCTGCAGCAAATATCACGTCTCAGATTTGTTGGAGACGCAATGATTCGTTTAATGTAACAGAAACCAAAAATACCCACTTCCTCACGTGTGCGTTACTATACTGCTGCTGATGTTGAGGACAGACGACtgcagttacatttctgtttcCTCCAGACTCTTTGGACTATACCCCCGATGGACTTACTGTGGATAAACAGTAATGCTCAGAGGGAATAGGGAAAGGGTTGTCCCTCATTTGGCAGTGTAATTGACGTCATGAATCTTCATTACTGATTCTAGTGTGCTGCAACTGATTGTCGATGAGAATACCTAATCAGTGTGAGACTTTGTCCATGgcattgttgtgggtctgtcaAAAGAGCATCACATACAGTgaagggaaaaa

Function

GO:

id name namespace
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00486 KMO; kynurenine 3-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202122 lncRNA upstream 484392 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 643180 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 647747 16114344 ~ 16114699 (+) True G160463
TU201919 lncRNA upstream 932680 15828776 ~ 15829766 (+) True G160375
TU201689 lncRNA upstream 1344892 15402285 ~ 15417554 (+) True G160200
TU202247 lncRNA downstream 129736 16899895 ~ 16902440 (+) True G160648
TU202248 lncRNA downstream 135090 16905249 ~ 16910033 (+) True G160649
TU202349 lncRNA downstream 409558 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 638098 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 1028040 17798199 ~ 17804178 (+) True G160869
AMCG00001811 mRNA upstream 127431 16605907 ~ 16635015 (+) True AMCG00001811
AMCG00001812 mRNA upstream 175320 16568842 ~ 16587126 (+) True AMCG00001812
AMCG00001813 mRNA upstream 202892 16554980 ~ 16559554 (+) True AMCG00001813
AMCG00001814 mRNA upstream 384586 16293826 ~ 16377860 (+) True AMCG00001814
AMCG00001799 mRNA upstream 526444 16222744 ~ 16236002 (+) True AMCG00001799
AMCG00001825 mRNA downstream 46817 16816976 ~ 16821826 (+) True AMCG00001825
AMCG00001824 mRNA downstream 95331 16865490 ~ 16869319 (+) True AMCG00001824
AMCG00001820 mRNA downstream 100237 16870396 ~ 16897808 (+) True AMCG00001820
AMCG00001818 mRNA downstream 176365 16946524 ~ 16951511 (+) True AMCG00001818
AMCG00001819 mRNA downstream 199661 16969820 ~ 16976960 (+) True AMCG00001819
TU202141 other upstream 390142 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 466940 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1323415 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1427879 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2492256 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 647192 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1417743 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1446416 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1900123 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 2129178 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile