RNA id: AMCG00001816


Basic Information

Item Value
RNA id AMCG00001816
length 1560
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00001816
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16635464 ~ 16644981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCACATGCACATGACTGAGAGGAGCCAGAACTGAGACTTCAAACACACTGGAGACAGCGGAGACGTCGGGCTCTCGGCTCCCCTTCACCTCCGCAGAGCTGCTCTTATGGGCATCACCGGCGACCAGCAGGCTCCCCCAGGACTGAGGTCACGGCACCGCGACTCCTAACCGCCGCTTCTGGGATACTCTACAGCACTCAGCGCACCGCAGCACGCCTGGCCGAGAGGATGCACTGGAGGCTGATCTCCGCAGTCTTTCTGGCGGGAGTCCTGTCGACCGCCGTGGAGTCGAGGAAGAACCGGCCGAACGGGGCCATCCCCTCACCCTACAAGGACAATGACAACACGTCGGACCGGCGGGCGCGCAAGCAGGAAGTGCTGGCCTCCAGCCAAGAGGCGCTGGTGGTGACGGAGAGGAAGTACCTGAAGAGCGACTGGTGCAAGACGCAGCCGCTGCGGCAGACGGTGAGCGAAGAGGGCTGCTTGAGCCGCACCGTCATCAACCGCTTCTGCTACGGCCAGTGCAACTCCTTCTACATCCCGCGGCACGTCAAGCGGGAGCAGGAGTCCTTCCAGTCCTGTGCCTTCTGCAAGCCACAGAAGTTCACCACGCTGACGGTGGAGCTGGAGTGCCCCGACCTGCAGCCGGCGTTCCGGCACAAGAAGATCCAGCGCGTGAAGCAGTGCCGGTGCACGTCGGTCAGCGTGGGCGAGTCGGGCAAACAGTGAGTGCCGCCACGGCCCGGAGGCGGCACCGCGGACACGGCTCTGTGCGCTTATTCTTCTCAAAGGAGAGACCTTCACAGACTCGGAAACAGGGGGGCGATGGtttcctatatattttttgtaatgattattattattaacggCACAGTAACTGAACCCCAGCCAACAATGTCCTTCAGACGGCAGAGACCAGCGTCCGGAGGTCCTGATTCACAGGACAGTTAGACACTGCCTTCAGAAAGACATGGACCTGCTTTAAACTGCCGCTGGACAGCTCTAGACGATCCTCATTTTACTCAAGCAGATCTGTagaattatatgtatatatattttaaaatatatatatgctgttaattttattaaatgtaaaaactggTTAGACTTTCAGCCACACAACACTTTAATCAGTAAGCAGTTAGACTTTCTGTGCAAGTATGTAACCACCTACAAAGCACTTCGCCCTGTGTGGACAAACTAAGTAGCAAAAAAATGTTGTCTAAAGATCTGCCGATCTGGACTCTTGTTATGGGCGACCGCTGGCTGAGACACAAACCGTATACAGTGCCGGAGCGGAGCAGAGACGGACTAATGCGTCTGATCATGATAAGACAATCTGTGTGCCTGGCTGAGCTGCCCTGACTGTCAGAAACAGGGCCACACAGACGGGCCCCCGCAGGGCCGGCGGACCCAGGCCACACGCACAGCCACGGACTGGACTGAGAAATAACACGGAGATGGTCtgcaaaggagagagagaaaaaaggagatGATATATTAAACTATGGTACAATAAAGTATATATGtctagagaggaaaaaaaagaataaaatct

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K23318 GREM; gremlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202128 lncRNA downstream 319901 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 399661 16234415 ~ 16235803 (-) True G160538
TU201925 lncRNA downstream 805703 15828758 ~ 15829761 (-) False AMCG00001791
TU201932 lncRNA downstream 839106 15791996 ~ 15796358 (-) True G160387
TU201877 lncRNA downstream 942850 15691569 ~ 15692614 (-) False AMCG00001784
TU202225 lncRNA upstream 171958 16816939 ~ 16817195 (-) True G160631
TU202234 lncRNA upstream 209672 16854653 ~ 16854957 (-) True G160640
TU202283 lncRNA upstream 330467 16975448 ~ 16975879 (-) True G160682
TU202404 lncRNA upstream 763230 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 957100 17602081 ~ 17604562 (-) True G160842
AMCG00001804 mRNA downstream 356072 16273328 ~ 16279392 (-) True AMCG00001804
AMCG00001802 mRNA downstream 437968 16177185 ~ 16197496 (-) True AMCG00001802
AMCG00001801 mRNA downstream 458910 16171241 ~ 16176554 (-) True AMCG00001801
AMCG00001803 mRNA downstream 465009 16167863 ~ 16170455 (-) True AMCG00001803
AMCG00001810 mRNA downstream 486889 16146837 ~ 16148575 (-) True AMCG00001810
AMCG00001817 mRNA upstream 946 16645927 ~ 16678629 (-) True AMCG00001817
AMCG00001827 mRNA upstream 79494 16724475 ~ 16732575 (-) True AMCG00001827
AMCG00001826 mRNA upstream 127195 16772176 ~ 16778573 (-) True AMCG00001826
AMCG00001829 mRNA upstream 152584 16797565 ~ 16797975 (-) True AMCG00001829
AMCG00001828 mRNA upstream 194413 16839394 ~ 16840260 (-) True AMCG00001828
TU201878 other downstream 932964 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1114825 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 1133696 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 446437 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 885885 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 1215158 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 1263773 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 2190801 18835782 ~ 18850884 (-) True G161153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010670 True 866 mRNA 0.53 2 NC_007123.7 47543832 ~ 47558276 (-)
grasscarp (Ctenopharyngodon idella) TU343297 True 2890 lncRNA 0.40 2 CI01000090 568894 ~ 571804 (-)