RNA id: AMCG00001819


Basic Information

Item Value
RNA id AMCG00001819
length 4170
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00001819
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16969820 ~ 16976960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGCCTTCTGGAAAATGGTATGCTGTGCGTAATAAAGACCAAATCCATCGAGAGAGTAATTGCTCCAATTGCAGCTCAGGTTTGCCATCTGATTATCATAAGTGAACTGGGAGGCAGAGCCCAGGAGTTCGCCGAGCTGGAGGGGGCCGCTGAAGATGTGGCAAAAGCTACCAAGAAAATGGCCAGTGTGGCTTTTAGGCTTGTGCAAGAGTCAGAAGATGACATTCTACAGAAAGAGATGAGGCCAGCGATGGAGTCTCTGATAGCATCCGGACAAAACATCCTCTTGGCTGCCCAGAAGCTCAGCATCCAGCCGCAGATATCTGACCACAAAGAAGAACTTGTCATTGCAACACAAAACGTGTTGTTGGGAACTTTAAAGATTCTCTTAGTGGAAGACGACGCTGCTGTGAGGAAGATCGTGGCAGCGGCGCACTGGCTGTTGGATAGTCTTACCCAGGTCGAGGCGGCACCCAATATGCCATCTCTTCTGATGTCATTCCGGGGGTTTTCTGAAGCTCTACTGTTGTTGCACAACCTGGCCACAAAGCGTCTGGAGGAACTGAGGGACTCCAGTCAGCGAGAACATTTAGGCCACTGCTTGGAAGCTCTGACAAAATGCATCTCCATGTTATATACAGCCATGCAAACCACCATCAAACAGCCTCGCAATGCGGAAGCTCAAAGTGCCAAGAAGTACATCCTTGATCACGTGGACACCACCATAACAGACCTGATTTCACTGgtgaaaagtaatttaattgaaagtgCTTCTACCTCTCAGGGATACTATGTGGATAAACTTCAGGGGCTACTCCAGCTGTTGCCCAGCTCCAGATGTTCTTCAATTACAGACAGTGACTTTGACAGCCTACTACGAGATCTGGTGATGCACTGCATGGTGGTAGCCAGAGCTTCTCGAAAAGAATGGCAGCTCATCGTGATTAAACATTGCCAACACGTCCTGCAGCTCGGGACACAAATATCCAGGGAAGCGAGGAGGCTCGTAAAATGTTATGCTGACTCCAAACAATTGCAACAAGATTTGGAAGACAACTGTGCGTCTATGAAAAAGGAATTGGAGAACCTGGACAGTAGTATGTCGTCAGCCATTGTTTACCAGATGTTGGATATCTTTACAGCTCATGATACAGCTTTAGATGAGCTTCTAGGAGCAGCCACACAGGCTTCAAATATCCGAGGCTGCGGTGAGCTGGACCAGCTCCAACCTCTCCTCACTGCCTTCCTCACACATGCTGATCTCATGATCCAAGTGGCAGGCAATATCTCAGCCGGCTCCACTGACACAAAGGCCATTGAAAACATAGAGACTTCCAGAGCTTGTTTAAAGTGGCTACGGGATAATATTGTGCCAAACGTGCTAGAACTGGGAAGAAGTTCCCCGAACGCCAGCACTGTGAAGAGGTTGCAGGATCTCAACCACCAATGGGCAGAAGAAACCAGACAGCTGCTGGGTGCTCTCCACAATGTCATCAACATAAAGCAATTTACAGACCTGTCTGTGCAAGAGATGATGAGCGATAAAGCGGAGTGTCAAAAGGCTTTTGAAGGCCAAAGTGCCGATCAGTTTGGTGAGCATGCTGCCACTCTCACAGCACGCATTAAACACGTGATCGATGCGGGAAAGAGGCACGTGGGCAAAAGTGACGACCCGATTTTTCGTAACGGGCTTCTAGTGCTGGTAAAGCAAGTAGAAACGTCTGCTTCACAGGCAACCGTGGCGGTGCAACACTGTGTCAAACACTTCTCTAATGTGAAATCCTTCGAAACGTTTTCAGAAAAAGTGCTGGAGGCAATCGAGCGAATCCAGATTTTAAGGGACGGCCTGGATGGTGTCAATCACCCGCACATCCTCAGTCCTTTACGGGAACAAGCCCGGCAGCCCCCCGTTTCACAGGTCATCGTCACCAACACGGAAGCCAACTTGCCAGTCCTGGAGGTTCAAAATAAGAACACCTCCTCACAGTGCCATGACAAGTGTTTAGACAAAAACTTGTATAAACCTGCAGTGCTGGGAATTTCCCAGAGCAGTGATACAAGCATGACAGTTCCCATCAGGGACGACACAACGCCTGACCAAAAATTACCAGGCCTCGATCTTTTACCTGTCCTAAATGAAGTTCTCAGTGCAACTAAAGAGATGGATATGACTGTCCTGAACACGGCCTGCACTGCTGTCCTGGAGCTCTCAAACTGTTACATGGAGGCTGCAAAAGAGGCATCCACTGTCACCGACCATGTAGACAATAAAAAACTGGATTCTCTTAGATCTGAGGTCATGGCACTAACGTCAGCACTCATCAGAGCCGCTCAGGAGGCAGCCATGAACGCAGCACTTGGTACCGACACCGTGGACAAAAATGCTGCCTTACTGTCGGACAGCATCGCTGAAATGAGGCAGATACTGCTACCCGCTGCGGGAACCTGGTACCACGCGGTCCGAGCGATGTTGACTGACCGAGCACAGAAGAGCATCGCAGCGAACACGCAGGACATCAGTGAAGTGATGCTGTCCTGTTCCGACGTCGTCCAATCAGCTATCATTTCTACGGTGTCGGATTTTAACTCTACGCTGAGATCCGCACCGCAGCAGAACATCACCACACTAAACAGCAAGCTGAAGAAAGCGCAGACCAACACTAAACGTCTACTCGAAGTTGCGGCTGCACCAGTGAGATCTGACCGACTCGAGGGTCCGTGCATGTTATGGTCACTGTCCATCCAGGTTCTATTACGTTCACTCGATAAGCTATTAGGAGAACAAACGCATCCCACCGAAGGCCAGTCTTTAACGCATCGATTCACCCCACAGAAAGCGCTGGCGGTCATCTCGGAGAACTCGCTCCGCATCCAGGAGGCCGCCAAACTGTCCTCCTTGACCTGTAAGGACAACAAGACTAATTTAAAGATTGCAGACCTTCAGGAAGAAGTGAAGGTCCTCACAGAAGCCTTTCTCCAGTCGGCAGACAACCTCAGCACCATACCTCTGTCTCATATGAAACCGCTTTCCAGGTCTGAGCTGCTCCAGAGAGAACTCCGCATCAAGATCAAGATGCTGTCGGGTCTCGTCGACAGGGTTAATATCGATTATGTAGACGCGGTTCAAGATACTGTCCACTTTGCCACTCTTGCTGCTACACAAACTGGTGAGGAGAAGATACAAGCAGCGAAGGATTTCGAAAGAGAGGCAGGACAGCTATTACAAAATGTCAAAGTTGCCAGTGAAAACATACAGCACTGCCTTAACTATATCAGGGACCCCCGAGTCAGATGCACTCTGAGGTTCGTTAATGAGCATCTGTCCTTCCTAACATCTGACATCGTAAGCAGGGCCAGACACATCGTCGAAACGCAGGATCTCCGTGACTCCACGGGCCTAGAAATCCGCACAAAAGACTGGTCTGCGAAGGCACATTATCTTGTGACGGAAGTGCAGCGGGTCAGCGAAATCCACCCGGAGGCAAGAAATCTCATCCAATGTGCTCTGCGGTGTCAGCATCCGACTGAAGCCCCCGACGCCGACAGTGACACCCCTTCCGCCCCACGCGGACGTACAGGATTCGAAGACAACTCAAGTGTTTCTCGGAAGACAACAATCACAATCAATCGGAATAATGAAGACGACACTGGCAAGCCTCCAGTCCACAAATGTGAACCAGAAAAGACCCAGAAGGAGTTCATCGCGGCAGCCAAACACATTGCAGTCAGCGGTCAGAAGGTCTCCAAGTTCCTTCACATCATCGCTGATCTCTCACTGGACGGGCGTTGTGCCGAAGAGCTCTTGCATATTGTCGAGCAGATTCGCACCATTAGCAGCCAGCTGACCATCATCGCAAGCGTGAAAGCAGGGACGGTGGGAAGCAGGGCGTCAGACGAGGTCCTGGTGACAAATGCACAGAACCTGCTGCAGATCGTGCTGCAGGGCACGAGAGCTGCCGAAGCGGCCGCCGTCAAGGGTCTGAAGCAACCGTGGCCCGACTCGGACGAAGCCGCAGCCGCCAACCTGTGTCTCCAGTGGAGGCGGAGACTCCAGATCCAGCTCGCCCAGCAGGCCGCCAACCCCCACACCGATGAGCTGGGGCTTCGAAAAACATCCAGGCAGCCGCCAGCGCATAGTCTGGCCCTGCCGATCCAAATGCCCTGA

Function

GO:

id name namespace
GO:0030123 AP-3 adaptor complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202248 lncRNA upstream 59787 16905249 ~ 16910033 (+) True G160649
TU202247 lncRNA upstream 67380 16899895 ~ 16902440 (+) True G160648
TU202122 lncRNA upstream 691766 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 850554 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 855121 16114344 ~ 16114699 (+) True G160463
TU202349 lncRNA downstream 202757 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 431297 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 821239 17798199 ~ 17804178 (+) True G160869
TU202542 lncRNA downstream 883202 17860162 ~ 17861427 (+) True G160895
TU202559 lncRNA downstream 939835 17916795 ~ 17917054 (+) True G160910
AMCG00001818 mRNA upstream 18309 16946524 ~ 16951511 (+) True AMCG00001818
AMCG00001820 mRNA upstream 72012 16870396 ~ 16897808 (+) True AMCG00001820
AMCG00001824 mRNA upstream 100501 16865490 ~ 16869319 (+) True AMCG00001824
AMCG00001825 mRNA upstream 147994 16816976 ~ 16821826 (+) True AMCG00001825
AMCG00001815 mRNA upstream 199661 16762446 ~ 16770159 (+) True AMCG00001815
AMCG00001830 mRNA downstream 18695 16995655 ~ 17008469 (+) True AMCG00001830
AMCG00001831 mRNA downstream 78521 17055481 ~ 17066501 (+) True AMCG00001831
AMCG00001836 mRNA downstream 92922 17069882 ~ 17070658 (+) True AMCG00001836
AMCG00001837 mRNA downstream 97256 17074216 ~ 17092598 (+) True AMCG00001837
AMCG00001839 mRNA downstream 117604 17094564 ~ 17098333 (+) True AMCG00001839
TU202141 other upstream 597516 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 674314 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1530789 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1635253 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2699630 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 440391 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1210942 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1239615 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1693322 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 1922377 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile