RNA id: AMCG00001822


Basic Information

Item Value
RNA id AMCG00001822
length 3672
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00001822
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16899960 ~ 16905437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACCTGTCGGGTTCAGTGAAATGCAGCTGCTGTTCTGAGCGGCACTGAAATCGCACCTGGGAGcggcagagaggaggagaaagcGCTGAACCTGTCCGCTGCAGCATTGGCTTCACCTGGTGCATCCGAGCAGAGCCATGGCTGGGAACCGCAGCGCGCTGCCCCTCACAGACGTGCGCACCGTGCGGCTGTTGGAAGAGCCGTCCCCGCCCCCGCTGCTGCTCGTCCTGCTGGCCCTGCTGTGCGCGCTGCTGGCTGTGCGCGCGTCCAGATGTGTGACCCGGCGGCGGGGGCGCGGCGCGCCACCCGGGCCCTTCCCCTGGCCGGTGGTCGGCAACGCGCTTGAGCTCGGGGGCGCGCCGCACCTGTACTTCACCCGCCTGGTGCCCAGGTACGGCCCGGTGTTTCAGATCAAGCTGGGCAGCCGCAGCGTGGTGGTCCTCAATGGAGAAGATGCCATCAAGCAAGCGCTGGTCAAGCAGGGGGTGGACTTCGCCGGCAGACCACATTTCAGCTCCTTCAAGGCGGTGTCGGGCGGCCAGAGCATGGCTTTCGGCCCCTACAATGACCGCTGGAAAGTGCACAGGAAGGTCGCCCAGTCCACCGTCAGGGCTTTCTCCAGCAGCAACCCGCAGACCAAGAAGACCTTCAACCAGCACGTCATCTATGAGGTCCGAGAGCTGCTGCACATCTTCCTGGAGAAGAGCAGGCAGGAAGGGTACTTCCAGCCCAGCCGGTTCATGACCGTGGCCATCGCCAACATCATGAGCGCCGTGTGCTTTGGCAAGAGGTACAGCTACGAGGACGCCGAGTTTCAGTCCGTGGTGGGCAGGAATGACCAGTTTGCCCAAACAGTGGGCGCCGGGAGCATTGTGGACGTCATGCCCTGGCTCCAGTACTTTCCCAACCCCATAAAGACcatgtttgacaattttaagtCTCTCAACATAGATTTTTTCTCCTTCATTCACGACAAAGTCATCCAGCACCGAAAAAACATCCAGCCGGGCACCATTCGCGACTTGACTGATGCTTTTATTGTGGCTCTGGATGGGGGTTGGAAGGGCTCCAATGGCATCGTTATGGGCAAAGAGGATGTGCCACCCACTGTAGCGGACATCTTTGGAGCCAGCCAGGACACCCTGTCCACAGCCCTGCAGTGGATCGTGCTGCTGCTCATCAGGTTTCCCGAGACGCAGGTCAGGCTGCAGCAGGAGGTGGACAAGGTGGTGGACAGGACGCGGCTGCCCAGCACCGAGGACCGGGTCAGCCTGCCCTACGTCATGGCCTTCATCTACGAGACCATGCGCTTCAGCAGCTTCGTGCCCCTCACCATCCCCCACGCCACCACAGCCGACACATCCATCCTGGGCTACCACATCCCCAAGGAAACCATCGTCTTCATCAACCAGTGGTCTGTCAACCACGATCCGCAGAAGTGGGCCGACCCGGGCACTTTCGATCCCACGCGGTTCTTGGATGAGAGCGGCGCCCTGAACAAAGACCTGACCAGCAGCGTGCTGCTCTTCTCCTCGGGCAAGCGGCGCTGCATCGGGGAGGAGCTCTCCAAGATGCAGCTTTTTCTCTACACTGCCATCTTGGCCCACCAGTGCCACTTTAAAGCCAACCCTGCCGAGGAGGGGAGGTTCGACGCCGCGTACGGCCTGACCTTGAAGCCCGAGCCCTTCTCCGTGGAGGTGACGCTCCGGGACTCGATGCAGCTGCTCAACTCCTACGTGGCGGAGCTGCAGGCAGCGGAGACGGGCCAGTAGGGTGTCTGGCTCCAGACGGGTCGACGCCGTGGTAAATAATGAAGGTAACGCAGAATCCGGAAGTCAATTTCTGCATGTGCGGTTGTGCCATCGAGCTTCACcttaaatctgtatttattctcTCAGGTGAAATAGCTGTAGCTCGCCTTTAGAGGTGTAGTTACATAGTTTGTTTTTAGAATCTCCTCATGGCTAATTGCACTGATTTGTTTCTGATGTCAATAGCCTCACTTTCAGATATAGATGTCAGTCCTAAGTGGGCAAAGCTGCGCGCCACTGAAACGACCGGGCAGAGATGGCCAGTTCGCTTTGAGATCATACTGCCACGGGGCTGATTTTTAAGAAACTGACTGGTAATGCTATTGCCACACCCAGTAATCACCCCTTTGTTTCTGATGGACGATTCCTCAGCCATCTTTTGATGCATGTTGCGCATCCTTCATTACAAAACCGTGTTCCTTGCCGGTAGGACCATCTTACCTGCTCTCCTCATTTACAGTAACGCGATAGAGAGGAATAGCCTTCGTTAAAAGCTAAGGAGGGGAGGATAACTGCACAATATACCTTAAATTGAACAGTCGattgatttttaaagcattttctaCTTGTATGTATTGAGTTATGTGAAGATGCATTTCCAAATTTcgaattaacatttaaaaattagcACAAACTTCCATAGAGCATTGAATTCCCTTTATTTTAACGTTAAACACGCTGGACAGCAGAATTCACTTGAAATGCCTTCAGACCGTTAATGTGACGATGCTTGTATAAGCATCTTTTGTACAATGGATTAAACCTGTCTGAACTATAGACATCTGTGATCGCAGAATTTTatagaattttatttttactttgagaAACTGCTGTTGTTTCCTCTATCTCTCATTTGGGCATTCACCTTGTATCGTATCGTGAAGTTGTGAAGTGCAGGAAGCTAATGAAagtaaatcaaatgtattagtTTACCAGAACAATCTTCTATCCAccatctcctcctccccctgtAATCCAGTTTGGGGATTTTAGTGAAGTGTAAACTGGTAAGATGTGGAAGTGTAGAGAAGAATGTTGCTCCCACAGACACAAGTTTTATACCCAAATAAACCTGTCAATTTCTTctatttttcttcactttaaaGGATACTCATTGCCATTTATATTgccagttaaaataaataacaataactatGTTATAATGGTATGATCACTGTTGTACCCAGCATCCATCACAGTGTTCAGACAacagtacaaaaacaacaggaaatcaATACACCAAACCAAAAGCACATCAATTCCGTGACCATTTGGTACTTTGTGTGCCTTATCCTATCAATGTTCAAATACCGTACAGgagatatatataattatttaaacctTTAATGGATACATTCACTTTTTCTTGTTCTGACCACAAGAGTCAAGTGCCTCAGGTATTGAGAAAAAGCCGACGTCTTGAACTTAGCCTCTTTCTGTGACCAGCTGTATGCAAACACGTTTTCAATTGTCTTCCTTATTTAGATCTATATTAGATCAGATTGTTTTACTGTCATTATTGTGAAATCTGTCTGTGAACCAGTTAGTTGAAATCCATATCTACTGTATTTTCACTTTCAtgtgacattgtttttaaaataattctgataAGCTTAAACATATGTAGAAGGCTGCTATACTTCACCTGTTTGTGTCCTGTTGTTTAGATCTATAATTTAACTTGCACATTACAGTTTTATGGTTTGATCATATATATCATTTATacatctataatatatatatatatatatatatatatatttgcagtaACTGAATGTCATTTAAAGCTATTCTATTATGTATACCACTGAGCAAGTTAACCACAATGTTTtgttatctttttaaaaattaaaggaGAAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07410 CYP1B1; cytochrome P450 family 1 subfamily B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202234 lncRNA downstream 45003 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 82765 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 584397 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 664157 16234415 ~ 16235803 (-) True G160538
TU201925 lncRNA downstream 1070199 15828758 ~ 15829761 (-) False AMCG00001791
TU202283 lncRNA upstream 70011 16975448 ~ 16975879 (-) True G160682
TU202404 lncRNA upstream 502774 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 696644 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 902581 17808018 ~ 17810015 (-) False AMCG00001865
TU202551 lncRNA upstream 960579 17866016 ~ 17866221 (-) True G160903
AMCG00001828 mRNA downstream 59700 16839394 ~ 16840260 (-) True AMCG00001828
AMCG00001829 mRNA downstream 101985 16797565 ~ 16797975 (-) True AMCG00001829
AMCG00001826 mRNA downstream 121387 16772176 ~ 16778573 (-) True AMCG00001826
AMCG00001827 mRNA downstream 167385 16724475 ~ 16732575 (-) True AMCG00001827
AMCG00001817 mRNA downstream 221331 16645927 ~ 16678629 (-) True AMCG00001817
AMCG00001823 mRNA upstream 46084 16951521 ~ 16959906 (-) True AMCG00001823
AMCG00001821 mRNA upstream 55028 16960465 ~ 16968616 (-) True AMCG00001821
AMCG00001832 mRNA upstream 71886 16977323 ~ 16990978 (-) True AMCG00001832
AMCG00001833 mRNA upstream 106039 17011476 ~ 17020838 (-) True AMCG00001833
AMCG00001835 mRNA upstream 117411 17022848 ~ 17041994 (-) True AMCG00001835
TU201878 other downstream 1197460 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1379321 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 1398192 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 185981 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 625429 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 954702 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 1003317 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1930345 18835782 ~ 18850884 (-) True G161153

Expression Profile