RNA id: AMCG00001823


Basic Information

Item Value
RNA id AMCG00001823
length 4265
RNA type mRNA
GC content 0.56
exon number 15
gene id AMCG00001823
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16951521 ~ 16959906 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAACTGTATTCTATGGTACTTCCGCTGTGAACCGGAAGTGGCATTTCTAACAAGCATGGATTCCGCGGAGCAGTGGAGAAGCAGCCCCGCCGCTCCCAGCCTCAAGAACCTCACCGAACCGGGCTACGGGCTCCCGAAGAAGAAGCAGCATGCGGCGGTGCAGGGCCTGGTCAGGGCTCACATCGACTCGTTTGACGAGGCGGTTTCCGAGGGCCTCAGTCGGGTGGTGCAGgcGATTCCACCTCTggaattcatgtttaaaaatgatcGCCTTTCACTGGCATATGTCGACGTTGCCATCAACCGCCCCACGGTGCCTAAAGGCAGCATTTGCCGGGACCTGAGGGTGTTCCCGGGAGAGTGCCGAGGCCGGCGCTGTTCATACCGAGGGAAGATTGTGGCAGGTGTCAGCTGGTCCGTCAATGGGGTTCCTAAAGGGATTATAAAGCAGTCTCTTGGTATGGTGCCCATCATGGTGAAGTCCAGACTATGCAATTTGCACGGCCTGTCTCCCGCAGAGCTGGTTGAGCATCACGAAGAAGCAGAGGAAATGGGAGGGTATTTTATCATCAACGGCATCGAGAAGGTCATTCGAATGCTGATAATGCCCAGGAGGAACTTCCCCATCGCCATGGTCAGACCCAAGTATCTCAATGCACTGCGTCAAAGACGAGCACACGGCCATTAATATGAACCTGCACTACCTTGACAATGGAACGGTCATGGTGAACTTTATTTACCACAAAGAGCTCTTTTTCATCCCTCTGGGCTTCGCGCTGAAGGCACTGGTGGATTTCACAGATTACCAGATCTTCCAAGAGCTGATCAAAGGCCGGGAGGATAACTCCTTCTACAAGAGTTGTGTGTCTGAAATGCTGCGCATGGTGATGGAGGAGGGCTGCACCACCAGGATGCAGGTGCTCAACTACCTGGGCGAGCGCTTCCGGGTCAAGATGCAGCTGCCAGAATGGTACTCCAACCAGCAGTGCGCAGAATTCCTCCTGGAACAGTGCCTCTGCATCCACCTGAGGTCCAGCGCCGAGAAGTTCTACCAGCTGTGCCTGATGACCCGCAAGCTTTTCACCTTCGCCAAGGGAGAGTGCATGGAGGAGAATCCAGACAGTCTGATGTGTCAGGAGGTGATGACCCCGGGCCAGCTGTActtgatgtttttaaaaGAGAGGATGATGGCCTGGTTGCATTCGGTGAAGATAGTGATCGACAAAAAGGCGCAGAAAGGCTACACCACTATAAACTCGGACAGTCTCATGAAAATGTTCAATCTGGGGATGGACTTGACCAGACCTTTTGAGTATCTCTTGGCTACGGGGAACCTCCATTCAAAAACAGGCCTGGGCATGCTGCAAGACTCAGGGCTCAGCGTCGTGGCCGACAAGCTCAACTTCATCCGCTACCTGTCGCACTTCCGCTGCGTCCACCGAGGGGCGGCCTTCGCCAAGATGAGGACGACCACCGTGCGCCGGCTCCTGCCCGAGTCCTGGGGCTTCATGTGCCCCGTGCACACGCCCGACGGAGAGCCCTGTGGCCTGATGAACCACATGACCACGCACTGCCAGATCGTGACCAAGgccctccccaccaccaccctccCGGCGCTGCTCTGCTCCCTCGgtgtcACCCCGGTGGACGGCACCCCCAGCCGGCCCTACTCCGAGTGCTACCCCGTGGTGCTGGATGGGGCCATGCTGGGATGGGTGGAGAAGGACCTGGCTCCAGCCGTCGTTGAGTCTCTGCGTAACTTTAAGGTGCTGAAGGAGAAGCGTGTGCCACCCAGCTTGGAGATCGCGCTGGTGCCCATGACGGGCAAGGCCAGCATCTACCCCGGCCTCCTGCTCTTCACCACGCCCTGCCGCATGGTGAGGCCCGTCCGCAACCTGGACAGCGGGAAGGAGGAGCTGATCGGCACCTTTGAGCAGCTCTACATCGACATTGGGATATTCGAAGAGGAGATCGTGCCGGGGGTCACCACCCACCAGGAGCTCTTCCCCCACAGCATGCTGAGTGTGGTGGCCAACTTCATCCCTTACTCTGACCACAACCAGAGCCCCAGGAACATGTACCAGTGCCAGATGGGCAAGCAGACCATGGGCTTCCCCCTGCATTCGTACCAGGAGCGCTCTGACAACAAACTGTACCGCCTGCAGACGCCCCAGAGCCCCCTGGTCAGACCCCTCATGTATGACCACTATGACATCGACAACTACCCCATTGGAACCAACGCCGTGGTGGCCGTCATTTCCTACACTGGGTACGACATGGAAGATGCCATGATCGTGAACAAGTCTTCCTGGGAGAGGGGCTTTGCTCACGGCTGCGTCTACAAAACCGAGCTGGTGGACCTGAGCGACAAGGTGAAGTCGGGGGAGGACTGCCTGGTGTTCGGGGTGAAGCCCGGCGACCCGAAGGTGATGAATAAACTGGACGAGGACGGGCTGCCCCCGATCGGGGCGGTGCTGGAGTTCGGGGACCCGTTCTACAGCTACGTCAACCTCAACACCGGGCAGAGTTTCGTCACCTTTTACAAGAGCAAAGAGAGCTGCACGGTGGACAACATCAAGATCTGCAGCAACGACAGCGGCACGGGCAAGTTCAAGCGCGTGTGCATCACCATCCGCGTGCCGCGCAACCCCACCATCGGGGACAAGTTCGCCAGCCGGCACGGGCAGAAGGGCATCCTGAGCCGGCTGTGGCCCGCCGAGGACATGCCCTTCACCGAGAGCGGCATGACCCCTGACATCCTGTTCAACCCGCACGGCTTCCCCTCACGCATGACCATCGGCATGCTGATCGAGAGCATGGCGGGCAAGTCGGCGGCGCTGCACGGCCTGTGCCACGACGCCACGCCCTTCACCTTCTCCGAGGAGCACGCTGCCCTGGACCACTTCGGGGAGCTGCTCAAAGCGGCTGGCTACAACTTCTACGGCACCGAGCGGCTCTACAGCGGGCTGAGCGGCCTGGAGCTGGAGGCGGACATCTTCATCGGCGTGGTTTACTACCAGCGGCTGCGCCACATGGTCTCCGACAAGTTCCAGGTTCGGACCACGGGCGCCAGGGACAAGGTGACCAACCAGCCGGTGGGGGGCAGGAACGTGCAGGGCGGGATCCGCTTCGGGGAGATGGAGCGCGACGCCTTGTTGGCCCACGGCACCTCCTTCCTGCTCCACGACCGGCTGTTCAACTGCTCCGACCGCTCGGTGGCCCAGGTGTGCCTGGAGTGCGGCAGCCTGCTGTCCCCACTGCTGGAGAAGCCGCCGCCCTCCTGGTCGGCCACGCGCCGCAGGAAGACGCTGTGCACGCTCTGCCGGAAGAGCGACTGCCTGGACACCGTGGCCGTGCCGTACGTCTTCCGGTACTTCGTTGCCGAGCTGGCGGCCATGAACATTAAGGTGAAGCTGGACATTAAGTAAATCTGTCGAGACTGATTTGTTGTGGTTCTGAAGGCCACGATGGCTTCACAGCTTCTGGTTTTCAAGAAGCAAATATCTGATGGGCCGCGAAGTGGTCTGAGTTCTGCTCAGTCAGGACAGTGTGCCGTATATAGCAATAGCAGAGATGCCAAGTGCTACTATGCTCCAATTTCAGAACTTGGCATCTCTGCAGTCGGTTATTTTCATTGCTTTAGAACTATATCCACAGGTGTAAGGAATAGGATGTAATTTGCACAGTTACCTGTACTATCACACATCATTGACCGCAGTAATGTATGATGGTCACTTTTTCCAAAGCCAAGCCGTGTTCTGTGCCTTGTGGGGGTTTGGGTTATATTGAGGATTAAAATGTTCAGCTCCTCCGCATAGTGGAGGCAGATCCCCGCAGCAAACGGAGACGGTTGCGCTTCACAGAATAAACCTAAACCTTATTCCTGAACAGTCTGGAGTCGGTCCTGAATCTCTTTGAACTTCACCAGCCTCATGAACAATTGTGTGGTTCAGTTAAAGCCATGTGAAGGAGAAACAAACTAGCTTttttgcttgattttttttgtctacatttcatatatatgcAGCCAATACCAGTATAATGGAATGTAAGCACTTggttattgtaaaataaatccagaaaacaGGATCATCAGGTCTACTGCGACAGGCAGGTGAGTGAGTGTGACACGAGGCTGGACAGCAAAGATCAGCACGTATGTTAAGTGTGATTCAAAGAACTGGCATCCCAAAATAAAGCCAtcatgaaaatgataaaaacacCTTCACAATccactgcttttcattttaaacacaagtCTC

Function

GO: NA

KEGG:

id description
K03002 RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202234 lncRNA downstream 96564 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 134326 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 635958 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 715718 16234415 ~ 16235803 (-) True G160538
TU201925 lncRNA downstream 1121760 15828758 ~ 15829761 (-) False AMCG00001791
TU202283 lncRNA upstream 15542 16975448 ~ 16975879 (-) True G160682
TU202404 lncRNA upstream 448305 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 642175 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 848112 17808018 ~ 17810015 (-) False AMCG00001865
TU202551 lncRNA upstream 906110 17866016 ~ 17866221 (-) True G160903
AMCG00001822 mRNA downstream 46084 16899960 ~ 16905437 (-) True AMCG00001822
AMCG00001828 mRNA downstream 111261 16839394 ~ 16840260 (-) True AMCG00001828
AMCG00001829 mRNA downstream 153546 16797565 ~ 16797975 (-) True AMCG00001829
AMCG00001826 mRNA downstream 172948 16772176 ~ 16778573 (-) True AMCG00001826
AMCG00001827 mRNA downstream 218946 16724475 ~ 16732575 (-) True AMCG00001827
AMCG00001821 mRNA upstream 559 16960465 ~ 16968616 (-) True AMCG00001821
AMCG00001832 mRNA upstream 17417 16977323 ~ 16990978 (-) True AMCG00001832
AMCG00001833 mRNA upstream 51570 17011476 ~ 17020838 (-) True AMCG00001833
AMCG00001835 mRNA upstream 62942 17022848 ~ 17041994 (-) True AMCG00001835
AMCG00001834 mRNA upstream 83812 17043718 ~ 17054044 (-) True AMCG00001834
TU201878 other downstream 1249021 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1430882 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 1449753 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 131512 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 570960 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 900233 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 948848 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1875876 18835782 ~ 18850884 (-) True G161153

Expression Profile