RNA id: AMCG00001825


Basic Information

Item Value
RNA id AMCG00001825
length 3054
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00001825
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16816976 ~ 16821826 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGCCGACAATCATCCATCAGATTATCGATGAGCTCTACAGTAAAGACGTCATCAACTTGGAGGAGAAAGATGTCATTCAGTGCGAGACAGTTGGCACAAGAGCCGCTCGATCAATCATTAACATAATGGAGCAAAAGGGGGAAAGCGCCTGTCAATTATTTGTTGACTGTCTCCGAGAAACAGACAAATTCCTGTATGAAGACCTGCTTAATGGATCTGTATCTGCCGAACAATCTGAACAGAACTGGCAAAGGATGGCACAAGATTTAAAACGCCTGTATGGGTCGGCCTATTTTCAGAAGTTTCATCCTTTGGGGGAGGACATAGACATCATTTTTGACTTGGAAACAACCTTCACGGATGCTCTGTTTTGGAAAAAGGACATTCGGAATCAGAAAAGGGGTAATATGACTCTTTCCGAATGTCTGGATAAACTCCGGAGCCCGACTGCCATCGAAGGGGGAGCTGGCAAAGGCAAGACCACGCTCCTGAAGAGAATTGCATCGCTGTGGGCGTCTGGAGGGTGCCAGGTGTTAAGCAAGTTCAAGCTGGTCTTTTTCATAAGCTTGAGTTCTGCGCAAAGAGGAATATACGATACAGTCTGCAAACAGCTGTTGAGAGAGCCCTACACTGTTGACAGGAACTCTTTCAGAAAGGCTGTGCAGGACCTGAGTGAGAGCGTCTTGTTCCTTTTGGATGGATATGACGAATTCAAGCCAGAGAACTGCCCGGAGATAGAGGAACTGATCAAGCACAACTTTAAATTCCACAACACCGTGATCGTGTCAACTCGGACGGAGTCGGTCAGCAACATGCGGAAATGCGCCGAAATGATCGTGGAGATCGGGGACCTGAGCGAGGAGAACAGCAGGCTCATAATCGCCAACATCTTGGGCCCCGAACTCTCTGATGACCTCCTGATTCAGGTGCGAGACTCGGAGACCATGAAAGAGCTGATGAAGACGCCGCTCTTCGTGGTCATCTCGTGCGCCATTCGCCTGGGGGACACCAGCGTCATCCCCAGAACGCAGACAGTGCTCTTCCGCACCCTTTATGATCTCATGATCTCCCAGACCCAGTACAAAATGCCCCGCGTGGCTCTGGAGACGGTGCGGGAGAGCACCGATGTCTGCGGAGATCTGGCGTTGGACGGCATCTTCCAGCACTGCTTCGACTTCTACCTGAAAAAGCAGCTGCACAGTGAGCACGAGGAAGTGCTGCTCAAGTCCGGCCTCCTGAACATGCATACTGCTAACCGCTTCAATCCGGTCTACAGGTTCTTTCACAAGTCCTTCCAGGAGTACGTCGCAGGAAGGAGACTTCACGCACTGTTGACATCCAGCAAGGACTCGGAGGTGAAGAGGGGACAGCAGTACCTGAGTCAGATCGATAATATTTCCgatatttgtaataaattctACCATTTACTGATGTGCACTTGCGGGTCTTCCAAGCAAGCAGCCAGGATGGTGTTTCGACACATGGCGACTGTTAAGTGCCACGGGAGACTTCTCAGTGCCCCTGTTGAAAGTGACAAACCCAGTGGGGTGGTAGACTGTGACCAGGAGCAGATCTCACAGAATATGGAAGAACTTCACAAACTTGAGGAAAGCAACATGGAGAGCTTTGTTGCCTGTGCGTTGAGCTTTTTTGCAGAAAGCCTTTCCAATTCCGAGCTCAGCAGTGAACTTGAATCCTTCTTCCAGGACAAAAGACTTCACATAAGCAGCCTTTCCATTCCAGCCCATCTGTCGGACTTCTTCAGCCATCTGCCCAACTGCTTGACTGCTCTGGGCCTCATAGAGTTGGAGCTATTCGGTGAAAAACACTGTCCCGGAATCCCCAATCAAACCCGAAAGACCTACATCCCACAGCAGGCGGTGTCTCTGTTCTTTGATTGGACCCACAGCCTTAATAGCATCGCGGTGTACTTGAATGACTTTGAGAGGTTATCCaaaaaagacattgaaaaaGTGGAGAAAATCTGCTGTTCGGCCAAAAGCCTTAGACTTCATGTAACAAGAAGCAGAGGTATAAGTGGGAAGTTGCCTGAAGTCCTTAAGAGGTGTAAACCCAACCTCAAAGATCTGGTGATTGAAGAAACACCTCTGATGTTAACAGATGAGCAACACATTGTTCTGATGCAGAGGCTGAAGACCTTGTCCATCAGCAATCTGCAGACCGAACGACCGGAAGcaaaGGGAATAAAGCATTTGAATAACCTCACTCACCTGCACTTGTCCAAGCTCGAACACATTGGAAACGGACTCCGCTTTATAGCCGAGGCTGCGACGAGCCGAGCGCGcagcctggaggagctggagctcGTAGACTGCTGCCTGATGGAGGAAGCCGTTGCAGTCCTTGctcaaaatgtaaacaacaacagaagCCTCGCGACTCTTGATCTGTCTGAAAACCATCTGGAGGGAGACGCGAGAGACAGTCTTGATAAACTGGTTGACGAACTGGGGGCCCTGTCAGACCTGCACACCCTGATGTTGCCGTGGGGGGAGAGTGTGAGCGGCAGTCTGCCCAAGTTACTGAAGTACCTGGAGAAGCTGCCTGCACTGGTGAAGCTGGGACTGCAGAAGTGGTGTCTCACCGACCAGGATATGGAGCTCCTGGCCGCATCGGTCCGTAGCGGCTGCCTACGGGAGCTGCAGCACTTGGACTTGTCTGGGAATTGCGTGGGCAGCGCCGGCTGGTGGGCGTTCGTCAGCGGTCTGGGGGGCCTCAGGAAGCTCCGGGTGCTGGACCTGAGCTGCAGAGACAGCATGCAGCCCGAGTCGCGGCTGGTCAACGAGCTGGCCAGGAGGATCTCCGAGCTGCTGGCGCTGTGGAAAGTGGTGCTGCTGAACTGGCGGTTGGACGGGGACGACCTCCGCAATCTCAACAAGGGCAACACGGCCTTCGGGCGCGAGTTCCAGCTGCTGGTCAGCCCGGACACGATGGAGGACGAAGAGGTGGATGAAGACTTCCCAAGGCTGAGGAAGACCAAGGGAGAACATGCGAGTGATGTCACACGCCGGGGGGGCAGGCTGTTATGA

Function

GO: NA

KEGG:

id description
K12805 NLRC4, CARD12; NLR family CARD domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202122 lncRNA upstream 538922 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 697710 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 702277 16114344 ~ 16114699 (+) True G160463
TU201919 lncRNA upstream 987210 15828776 ~ 15829766 (+) True G160375
TU201689 lncRNA upstream 1399422 15402285 ~ 15417554 (+) True G160200
TU202247 lncRNA downstream 78069 16899895 ~ 16902440 (+) True G160648
TU202248 lncRNA downstream 83423 16905249 ~ 16910033 (+) True G160649
TU202349 lncRNA downstream 357891 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 586431 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 976373 17798199 ~ 17804178 (+) True G160869
AMCG00001815 mRNA upstream 46817 16762446 ~ 16770159 (+) True AMCG00001815
AMCG00001811 mRNA upstream 181961 16605907 ~ 16635015 (+) True AMCG00001811
AMCG00001812 mRNA upstream 229850 16568842 ~ 16587126 (+) True AMCG00001812
AMCG00001813 mRNA upstream 257422 16554980 ~ 16559554 (+) True AMCG00001813
AMCG00001814 mRNA upstream 439116 16293826 ~ 16377860 (+) True AMCG00001814
AMCG00001824 mRNA downstream 43664 16865490 ~ 16869319 (+) True AMCG00001824
AMCG00001820 mRNA downstream 48570 16870396 ~ 16897808 (+) True AMCG00001820
AMCG00001818 mRNA downstream 124698 16946524 ~ 16951511 (+) True AMCG00001818
AMCG00001819 mRNA downstream 147994 16969820 ~ 16976960 (+) True AMCG00001819
AMCG00001830 mRNA downstream 173829 16995655 ~ 17008469 (+) True AMCG00001830
TU202141 other upstream 444672 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 521470 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1377945 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1482409 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2546786 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 595525 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1366076 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1394749 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1848456 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 2077511 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile