RNA id: AMCG00001828


Basic Information

Item Value
RNA id AMCG00001828
length 867
RNA type mRNA
GC content 0.49
exon number 1
gene id AMCG00001828
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16839394 ~ 16840260 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGCCAAGACGCCCATCTATCTGAAGGCAGCCAACAGCAAGAAGGGGAAGAAGTGCAAGCTGAGGGATATCTTGTCTCCCGATCTGATCAGCCCTCCACTGGGAGACTTTCGCCACACCATTCACATCGGCAAGGGTGGGGAGCAGGATGCTTTTGGAGATATGTCATTCCTACAGGGGAAGTACGACCTCCTTCCCGGTAAAGAGGAGCAGGTGTCACCGCAGTACGTGGCGTGCAATGAGTTCTTCAGGGCAAACAGCACCTGTGATGCCACTTTTGCAGAGACTCCGTCACCGGTGTTGAAAAACGCCATTTCTCTCCCAACGATTGGAGGTTCACAGGCTCTCACTCTCCCCCTGCTGTCCGCCGTGACCTTTCCCACCAACCCCGAGCCCTTAGACCCTGTGATTGAACCAGCACTCGGCTCTGaggagacacagagaaacagcttCCTCCTCTCCATGGATATTTTTAATCCGAAACCCAGCCCCACCAAGAAGACCACCAAGAAATCGATCCTGTCTTTTGACATGCCAAAGGAAATAGAGAAAAAGAAGCAGTTTGAAAATGGCAAGATACATATGAACGATAATGGATTTAAAAACTCAACTCCCGGTTATGTGAACGGCAACGGAAAACTTCATCATTCGACGAATTTCACCGGACATTACAATGACTGGTTGAAAGGCAACAGTGTGGAGGACAATCTCATCTGTGACTATGAACTTGAACTCATGAAGGGGAAAAGCATCTTGGAAGAGTCCATGTCAGACATGACCGGCTCTCTTCTGTCACTCGAACTCGATTTAGGACCGTCCATTTTGGATGAGGTTCTAAATGTCATGGACAAACCAAAGATGTAG

Function

GO:

id name namespace
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202225 lncRNA downstream 22199 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 523831 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 603591 16234415 ~ 16235803 (-) True G160538
TU201925 lncRNA downstream 1009633 15828758 ~ 15829761 (-) False AMCG00001791
TU201932 lncRNA downstream 1043036 15791996 ~ 15796358 (-) True G160387
TU202234 lncRNA upstream 14393 16854653 ~ 16854957 (-) True G160640
TU202283 lncRNA upstream 135188 16975448 ~ 16975879 (-) True G160682
TU202404 lncRNA upstream 567951 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 761821 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 967758 17808018 ~ 17810015 (-) False AMCG00001865
AMCG00001829 mRNA downstream 41419 16797565 ~ 16797975 (-) True AMCG00001829
AMCG00001826 mRNA downstream 60821 16772176 ~ 16778573 (-) True AMCG00001826
AMCG00001827 mRNA downstream 106819 16724475 ~ 16732575 (-) True AMCG00001827
AMCG00001817 mRNA downstream 160765 16645927 ~ 16678629 (-) True AMCG00001817
AMCG00001816 mRNA downstream 194413 16635464 ~ 16644981 (-) True AMCG00001816
AMCG00001822 mRNA upstream 59700 16899960 ~ 16905437 (-) True AMCG00001822
AMCG00001823 mRNA upstream 111261 16951521 ~ 16959906 (-) True AMCG00001823
AMCG00001821 mRNA upstream 120205 16960465 ~ 16968616 (-) True AMCG00001821
AMCG00001832 mRNA upstream 137063 16977323 ~ 16990978 (-) True AMCG00001832
AMCG00001833 mRNA upstream 171216 17011476 ~ 17020838 (-) True AMCG00001833
TU201878 other downstream 1136894 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1318755 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 1337626 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 251158 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 690606 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 1019879 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 1068494 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1995522 18835782 ~ 18850884 (-) True G161153

Expression Profile