RNA id: AMCG00001832


Basic Information

Item Value
RNA id AMCG00001832
length 4670
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00001832
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16977323 ~ 16990978 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGTCGAGCGCCGCCATTTTGAGATTGCATTGCGGGCGCCATGTTTGTGTGAAGGAATAGAAACCACCGAAAATGATTAAATTGCTTGTTATTCCACCCTCCGTCTCCACAAATATCAAGAACACAGTCATCCGGCGGGACATTAGCAAAGCGGGGGTATCAAACTCTGTCacagtcttaaaaaaaacatcagtgatTGATTAAGAGACTgggatatatataaaaaaaaaaaagtgtgtttactCTTGTCTCTCACTAAAGTAACCGTGAGTTTTTCCAACTAATGTAATCCTTCATCATCTCTCACAGTCCAACGCCTCCTCTTGTGAGAGACTGAATGCAGCTCACTGTGGTCTCGGCAGCGGTGCGGTGTCGTGTCCGACCATCATGGCTTTTGCGAGCCTGTTCGCCAGCCCCCCAAACCCCGTCCTTGACAAAAACATGACAGACCAGTCTGAACTGGCAGGGGACGAAAGGGAGGATGGTGAACTCGAGGATGGGGAAATCGACGATGAGGGCATTGGCATCGAAGAGGAGGGGAAAGAggtgaaggaggagaaggagaaggaggagaagagtCACCGGCGCTCCAGAAAGAGGCACCgcaaagagagggagaagaggaagtCCAAGAAAAGGAGGCGTGACCGCCAGAAACATCATTCCCCGGGCAGCGATGGCAGCTCAGACAGCTATGACTCGGAGTTCGACCACCCAGAGAGGTCGCACAAGAAGAACGCGGCACCGGCCTACAGGGATTACGACTCCCAGTTCACCCAGCACGGCCAGCCGAGCGGCGGCGGCTACATGAAGCCCCAGAAAGCGCCGCCGCACAAGAACGACTTCGACAAGTTCAGCGACTACAGCGAGGAGAAGTACGACTACGAGGACGAGGACAACGACTTTGCGGATGAGCTGAACCAGTACAGGCAGGCCAAGGAGGCCACTGCCCCGGGGCCGCCCAAGGGGCCCCCCAAGGAGCAGATGATGAAGCCCCCCAATATGAAGGGGGTGCAGAAAGGTCCCGTGCTGAAGGGCAAAGGTCGGGGGATGGGCCGAGGACGGGGCGCGCAGAAGAACAAGAAGCAGAAGGGGAAGAACTGGGGCCGGGGGCGCGGCCGAGGAGGGGACCAGGGCGGAGACGGCATGAAGGAGGACGGGAAAGGCCCCCCCAATATCCAGAAGAAGCGCCCGATCATGACGCAGGAGTTCATCAACCAGCACACGGTGGAGCACAATGGCAGATACATCTGCAAATACTTCCTGGAGGGGCGCTGTATTAAGGGGGACCAGTGTAAATTTGAACATGAGATGGTGATTCCCGAtaagaagaaagaaatctgCAAGTTCTACCTGCAGGGGTTCTGTAGTAAAGGAGAAAACTGCATTTACATGCACAATATCCTTGGCGTGTTTTTAGTCCTGAACACGGAGGAGGAGCCAGTGAACGAGGACGAACAAGAGCTTGAGGACCTTCGGAAACAGGGCATCGCTCCCCTTCCCAAGCCTCCGCCTGGAGTAGGGCTCCTGCCGACGCCTGGGCCTCACAGCCCCCAGGAGGGCAGCCCGTGCGGGGGGAAGAAGATCCCCTCGCTGTTCGAGATCGTGGTGCAGCCAACGGTGGATCTGGCGCAGAAGATTGGACTGAGACCCAATTTCTACAACAGCTCCTCCCCTCCCGGGCCTCAGTTCCAAGGAAATGGACCTCCACCCCCACAGATGTTTGGCAGCGGCCCCGACGACATAACCGGGCCCAACGGACCCCCAGGTCCACCCCCGGGGTCCCCAGGCTCTCACCATGGAGGACCACCAGGAGGGCACTGCCCCCCCATGAACCAGAGTCCCCCCGGGCACGGCTTCCCCGGGCCGCACGGCCACCCGGGCCCCCCGATGCATCTGCCTCCGCCCGGGCCCCCCCCGGGCTATCACGGGATGCCGCCGGGGAATCCACACGGCAGCCGGGCCAGAGACAACCCCCAGCAGATGCCAGATCTCCAGAACATTCCCTACCAGGCCGACTTCTTCAACAACTACTACTCCAACCAGGCGGTTCACAGCTTGGAGTCGGCACCGCTGCAGGAAGAAGAAGCTCTGAGCATGGAGCAGCTGGCCTACACTTGTGTCCAAGACTCCCAGCAGAGCGGCACCGAGTCGGACGGCGGCAGCAACCACAAGGGCCCGGTCCAGGTGCCCGACTTCCTCCCGGCCATGCAGAAGGCCCTGTTCCTCCGGCTGAGCCAGAAGCAGCACGAAGGCGACCACCAGAAGGACGACGGTAAAGGACACAAGATGGCCAACAAGGACAAAGATGATGCTGTGAACTGGTACTCCAGTGATGAAGAGGACGGCAGCAGTGTGACGGCCATACTAAAGACCCTGAAGAAGCAGAACGAGATGATGAAGAGCCAGCAGCTGTCGACGGGCCAGCCAGGCCAGGGTCCCTGCGACCCCCGGCTCCAGAAGGAGAAGGGCGTCCCCTGTGATCCGCGGACTAAGTGCGACCCAAGGCACCGCGCGCCAGGGGAGGGGCGGAAGGTGGCAGACGTGGCGGTGGATCCGCGGCTGGTCCGGGACCCCAGGAAGATAAAGCCCCACGAATCTGGCCCTGCCAAGCCCGAAGGCCACCCGTCCCACAAGCAGCAAGCGGCAGACGACGACGAAGATGGCGAGAGAGAGCTGAGGGAGAAGGCGGCGAATATCCCCCTGGAGCCTCTGCCTGGCATGGCGTTGAGAGACCCTCGGTGTCAGCTGAAGCAGTTCAGCCACATCAAAGTGGACATCATCCTGTCCCGACCGGCTTTCGCCAAGAGCGTCGTGTGGGCCCCCGAAGACCTGATCCCTCTGCTCATACCCAAGCAAGAGCCCTCCATCAACCTGCCGCTGCCTCCTCTCATCGCCGACTGCAGGATGAACCGGAATCACAGCATTTTAAGCGACGCCAGTCAAGCCTCGCTGCCCCACGACCCTCGCCTCTCTGGGGCCCGGGCCAAGGATGGCTTCAGTAAAGTGGGCAAGCCCCCCGAGCCCAAATCATCTCCAGAAAAGCCGCTGGATCCTCGGCTCCACAAGGCGGTCGACCCCCGAATGGGCCGGCCCTCGGGTGCGGACTCCTCGAAGCCCCCTGCGGCGAAAGATTCCCACCCCGTCCCGGATCCTCGGCTCCTGCGCGGGAGCATGTCCTCCCTGCCAGCCCCTGCCCCAGCTCCTGCTAAACCGGAGCCGGAGAAACTCCCGCCCTACGCTCCCAAGCTGTCGTCTTCTAGCGGGGGTCTCGGCAGCCCTACCACCCTCCTGGGGGGCATCAGCCTGTACGATCCCAGGAACCAGTCGCCGCAGCCTGCGAAGGAAGAGGGAGAGCCTCCCAAGAAGTTAGGCGTCGCGAAACCGCCGGTCAAAGCGGAGACCATGCAGTCGCCCCCGGCCCCCGTGTCCAAGCCTGGCTCGGGCCCGGACGCCAAGGCGGCGGACGGTCCCTCCGACGCCCCCGCGGAGAAGTCCAACAGCTATGGCAAGGCCCGGCCGGTCTCCAAGGCGGCGCCGCCGTCCTCCGCAGCCCCGGCCGTGCACAACTTGCCCATCCAAGCGCTGGCCGGGCTGATCCGCCCCCCGTACAGCGACCCCCGACAGACTAGACAATCCGGACCCTCTAGCGTGTCCCAGGAGGCCGAGGCCAACGGGGAGCCGGACGGCAAACCGCTCAAGGACGTGTTCAAGACCTTCGACCCCACCGCCTCCCCTTTCTGTTAACGAGACGCTCCTGCTCCGTTTCGGATCGCGGACGCCCCGGGCCGAGCCACTCCCCTCCTCCGCGCACCCGAtcgatatttatttattttagccgtcgcacaacccccccccacgcTGTCGTTAGTCGCGGTTTCGTTGAGCTAGAGAACCCGACGGAGCCCCGGTTTGTATGAACAGCGGATGTATAGTGTATGTGATGAATCcagtaaagtttattttgtcaGTTGTCGTGTATCGAAGAGATGTGTGCTATTCAagtattatgattttaaacacatttttgttgacagaaacaaaaaaaacaaaacataaagatATAAAACTGCCACTTTTATAAACTGTACAGTACTTAGCTGATATTTAGCCAGAAACCACAGATAGTGTTACACAGCACCAGTCATCATAAATGTCGggttttgtttctgcaattacTGATCTTACTTTCAACACGTTGGTACTATGAccgttattattttttttacatatttattgcaCCAGACCGCGAGGAATGTCAGCACGGTGAGAGTTTCGCAAAGTGATTTTCCTCGTCTCAGTGGGAAACTGTACGAGACTGTCGATGTCTggccctgtctctctgtgaagTCGTTTTTTTTATCATCCTCATCTAATAAGGCAGcttgtatattgcatttttttctgttgtaataTAAATGCTATACTTGTCATTAACCCCTGCTCTGTTTGACCGTTTCTGTTGTCGTCGTTGTGctgttgaattaatttaaacctCCCAACTCATgctgcattgtgtttttaaagaacgTTTGACATGGTCTTCAATAAAACGAAACGCCTTCGGGTCGGGACAGGAAGGTGACAAATAGTGCTGCACactcctttatttattcatatgtttgtttattttaaaggtgtTGATATTAAACAGGATTGTATACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202283 lncRNA downstream 1444 16975448 ~ 16975879 (-) True G160682
TU202234 lncRNA downstream 122366 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 160128 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 661760 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 741520 16234415 ~ 16235803 (-) True G160538
TU202404 lncRNA upstream 417233 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 611103 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 817040 17808018 ~ 17810015 (-) False AMCG00001865
TU202551 lncRNA upstream 875038 17866016 ~ 17866221 (-) True G160903
TU202577 lncRNA upstream 924440 17915418 ~ 17915691 (-) True G160928
AMCG00001821 mRNA downstream 8707 16960465 ~ 16968616 (-) True AMCG00001821
AMCG00001823 mRNA downstream 17417 16951521 ~ 16959906 (-) True AMCG00001823
AMCG00001822 mRNA downstream 71886 16899960 ~ 16905437 (-) True AMCG00001822
AMCG00001828 mRNA downstream 137063 16839394 ~ 16840260 (-) True AMCG00001828
AMCG00001829 mRNA downstream 179348 16797565 ~ 16797975 (-) True AMCG00001829
AMCG00001833 mRNA upstream 20498 17011476 ~ 17020838 (-) True AMCG00001833
AMCG00001835 mRNA upstream 31870 17022848 ~ 17041994 (-) True AMCG00001835
AMCG00001834 mRNA upstream 52740 17043718 ~ 17054044 (-) True AMCG00001834
AMCG00001843 mRNA upstream 100375 17091353 ~ 17092549 (-) True AMCG00001843
AMCG00001844 mRNA upstream 162525 17153503 ~ 17154866 (-) True AMCG00001844
TU201878 other downstream 1274823 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1456684 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 1475555 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 100440 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 539888 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 869161 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 917776 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1844804 18835782 ~ 18850884 (-) True G161153

Expression Profile