RNA id: AMCG00001833


Basic Information

Item Value
RNA id AMCG00001833
length 2921
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00001833
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17011476 ~ 17020838 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGCAGGTGAGGCAGGTGAGGCAGGTGAGGCGGTGACGCGGCCCGGGGGCAGGTGGGCTGAGCCGCCTGCTGGTTCGCTTCCAGCTGGGAAACATGGCCGCTGCAGCGCGGTGGCGGACGCGGAGCTGCTCCTACTGGAAGCCGGATTTGGGTCTGTTGTTGCTGCTGGTCCGGACGCTCCTCTACGGCTCGGTGGCCGAAGCCGCCCCTGAGCCCGGGCAGTGGACCTTCACCATCGACAACGAGATGTACGATAAGACGTTCCTCAATCGCGGCGGCAGCCTGGATCCGAACCCTTTAGGGATCGGAGAGTTCATCGAGAACACGTACCGGGACGTGGTGTGTCACGACGAGCTGCATCTCTTTCCCATGTTAAACaagaGCAGGTCGTTACCGCGTCCCGTGTTGTCACCGTTGGCGTCGGTGGACGAGAACAAAAATGTTTCCAGATGGAGACGGAATGAATCGGGCGTTTTTCcgGAGGACGTCATTGCCACGTCGTGGAGAGACGGGCCGTATCTGTTAGTGGTTTCTTTTAAAGCACTCGGTGATAAAGTGGATTGGAACCTGACagTGCGTGTCACCATGGAAGGCAGTCACGGGTTTATATCCATCACAGAATGGCCGCTGATGATCGTGAGTTCCCCCGCCGTGTCTGGTTGTGCTGGGTTGTGTCTAGGCGAGGTGTTGTGGTTGCTCTTACAGCACGCTCTCGGTTGGTTTCAGTTCTACATGGTGATGTGCATCGTCTACATCCTGTACGGCGTGCTGTGGTTCCTGTGGTCGGCCTGCTACTGGAAGGACCTGCTGAGGATCCAGTTCTGGATCGCCGGGGTCATCTTCCTGGGGATGCTGGAGAAGGCCGTGTTCTGCGCTGAGTACCAGAACACCAACGTCATGGGCTCAGCCTGCCTCGTTTGGGAACGGTCATGCACCGAGTCGTTGGCCTCGGATCTGGCTCAAACCATAAAGACGCTGAAATTACGGAGAAACCCGGTGAAGTTATCCCTGTACAGGCACTTTACGAATACCTTGATAATTGCAATAATAGCGTCCATAGTTTTCATGATCTGGACAACAAAGAAGTTCAGGTTGGCCGAGTGTCAGTCGgACTGGATGGAGCTCTGGGTGGACGACGCCTTCTGGAGATTCCTGTTCTCCATCATACTGTTAGTGATAATGTTTCTCTGGAGGCCGTCCGTGAACAATCAGAGGTATGCGTTCACACCTCTGATGGACGACTCCGATGATGAAGAAATAGAGGAGTTCTTGGTGTCATCTAATGTGGCTGACGGTATAAAGCTGAGATCAAAAATGGAATCCAATGGGTCCGCAAGACCTGCAGCTAATCTGGATGAAGACTTGAAATGGGTCGAAGAAAACATTCCATCTTCCTTTGCAGATGTagCGATGCCTGTCCTCCTGGATTCGGATGAGGAAATCATGACAACGAAATACGAGATGTCCAAGATGGAGTGAGTTGTTTAGACTGCTGAACACGGCTGGTCACGGCTGACCAAATACGTCCCAGAAGCATGTAAGAAATAAACCTGACTGACAGAGTTCTTCAGGGATAACAAAACCGTTTTCATATGACGGACATGCTTTGcttgaaaaacaacaattttcCCTTCATCTAACTGGTTCAACTTGTCATCACTGAAATAATCTTGGGTCTGTTTTAATCTCCTCGCTTGTGTGTTAACTTTCACCGTAACCGCCGGTATTACAGGTGTTCTCTGGTGAGAATCGGACAGGGCTTCGCTGGCGTGACTTCAGCGGGTCTCCGCTTTTGGACGGAACATTCATATGCAAGTTTTTGTGCAGTTCTGCTCAAAATCCGTACAGTGAAGCTTTCTGATATTAAATTCAGCACCTGGACTTTGTGCACGTATGAATTTCTTTAAATACCAAAGTGTGACTGGTGTAAAAACCTTTATACAGGGGTGTAATTCAATGCcatattttcttctgctttccATGGCTGTATTGGAGAAAACCCCAGgcaaaaaaaatctgcatttccACACAGAcgaattttgttttttctcttgatCTATTTCTTCTACATTTTCTCCGTCTCGTTACGACCGTTTTAAGGAGCGTTGGCAACAGGACCGCCTCCTGCGCCATCGCAAAGAGCAATACATCATCGCGCCCTGCCAGGTGTACATATTTCCtctgtattaaatgttttaccttcattcttgttttaaaagtgtactTAACATCTTAATAGCCtttaagatttgttttgggGACTTTCAGTTACACGTCACCTTGAGGAATGAATTTCAAAATCGCCGAACCTTTATCTTTTTCAGTTACATGTTGGTGGTTGTCATCTTAAttcaatggaaattaaaaaaaattaataaaaaaaaaaaaatcttctggtTTCTGTGATAGAAAGTGCCTCTTGAATtccagcaaaaaagaaaaaaacaactcgATCAAGTCTCTGCGTAAGCATCGAGCGACAGGGAGATGAGTTTGGGGTCCTTGAAAGACTTCTTACGAAACAAAAGAAACGTTTGCCGCGGATGTCACAAATGTCAGCCAGGTGTGTCTGCTGGAGTAAATCTGCAgtagaaactttttttttttttttacagaattatAAATGACTCGAATATGAATGGGCtgctttatgttttaattatgtgttcTGGTTCTTTTTCACGGTTGATGAAATGGCAGCAGGAGCTCCAGAATATATGGTTTAATGTAACGTCTTTGTttgcctttgtttatttattttgtgtggcgATTGGGTTCAgacaaactttcttatgtaaacGCACAGTGagtctaaatgtttatttatgatcATCCTGACTGTTTCCtgaaaaaggttttgttttcagtattgattaactttattgtaaatatcaaataaaacggtttattttattgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202283 lncRNA downstream 35597 16975448 ~ 16975879 (-) True G160682
TU202234 lncRNA downstream 156519 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 194281 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 695913 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 775673 16234415 ~ 16235803 (-) True G160538
TU202404 lncRNA upstream 387373 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 581243 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 787180 17808018 ~ 17810015 (-) False AMCG00001865
TU202551 lncRNA upstream 845178 17866016 ~ 17866221 (-) True G160903
TU202577 lncRNA upstream 894580 17915418 ~ 17915691 (-) True G160928
AMCG00001832 mRNA downstream 20498 16977323 ~ 16990978 (-) True AMCG00001832
AMCG00001821 mRNA downstream 42860 16960465 ~ 16968616 (-) True AMCG00001821
AMCG00001823 mRNA downstream 51570 16951521 ~ 16959906 (-) True AMCG00001823
AMCG00001822 mRNA downstream 106039 16899960 ~ 16905437 (-) True AMCG00001822
AMCG00001828 mRNA downstream 171216 16839394 ~ 16840260 (-) True AMCG00001828
AMCG00001835 mRNA upstream 2010 17022848 ~ 17041994 (-) True AMCG00001835
AMCG00001834 mRNA upstream 22880 17043718 ~ 17054044 (-) True AMCG00001834
AMCG00001843 mRNA upstream 70515 17091353 ~ 17092549 (-) True AMCG00001843
AMCG00001844 mRNA upstream 132665 17153503 ~ 17154866 (-) True AMCG00001844
AMCG00001842 mRNA upstream 144994 17165832 ~ 17182616 (-) True AMCG00001842
TU201878 other downstream 1308976 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1490837 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 1509708 15499553 ~ 15501768 (-) True AMCG00001771
TU202328 other upstream 70580 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 510028 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 839301 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 887916 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1814944 18835782 ~ 18850884 (-) True G161153

Expression Profile