RNA id: AMCG00001836



Basic Information


Item Value
RNA id AMCG00001836
length 777
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00001836
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17069882 ~ 17070658 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCTTTCCCTCCCATCAACCTGCACCAGCGCCTCTCCTCCCCGGGGAAGGAGCTCTTCAGAAAGAAGAAGCCCAGCGCCGCCATCCCCCCGCAGTCTCTGGAGAAGGACCCGGACAAGGCGAAGTTTCCCTCCTGCTGGACCTCGGCGCATCTGAAGCAGCTGGGGCGCAAAGCACAGCCGCGGATCGGCCTCCAGACGCACCGAGGGGCCGGGGATGTGGGGCTGGAGTGCAAGACCTCCTGGCTGTCCTTGCCCAAACCCCTGGGCAACTCCTGCGACAGCATGCCCGTCTCCAGCTCCGTGGAGTCCGCCACCCGCAAGAGCAGCAACCATTCCTCCCGGAGTTCACTAGCCAAGGATGAGGCCGAGGAGGAGATCCGTTTCTCCCTGAGTCTCACCCCAGAGGCCATCCTGGTCCTCCAGAAGCGCAACTTGGAGAAGCAGTTGTTGGCCAGGCAGCAGAAGTGCGCCCTGGCGTGTGCGTCCTCGGACCTGCGGCACCGGCGCGTCTACCCGGGCAAACGGGCGCAGGGCTCCAAGGGTCACCTCCCCGTGGCCAAGCTGGACACCTCGGACGACATCAGGACGATCGTGAAGATCTCCCTTTTGAACGACCAGTACAAATACGACGACGTGGAGTACGAGGAGGAGGACTACGATGTGGACGAGACCGTGGTGAGGAAATGCAAAGAGTGGCTGGAGGGAGTGGAGAGCGCGGCCGCTTTTGGGAAAGTCGATAAACTGTCCACTTTGCCGCATCTGAACGGTTGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202248 lncRNA upstream 159849 16905249 ~ 16910033 (+) True G160649
TU202247 lncRNA upstream 167442 16899895 ~ 16902440 (+) True G160648
TU202122 lncRNA upstream 791828 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 950616 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 955183 16114344 ~ 16114699 (+) True G160463
TU202349 lncRNA downstream 109059 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 337599 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 727541 17798199 ~ 17804178 (+) True G160869
TU202542 lncRNA downstream 789504 17860162 ~ 17861427 (+) True G160895
TU202559 lncRNA downstream 846137 17916795 ~ 17917054 (+) True G160910
AMCG00001831 mRNA upstream 3381 17055481 ~ 17066501 (+) True AMCG00001831
AMCG00001830 mRNA upstream 61413 16995655 ~ 17008469 (+) True AMCG00001830
AMCG00001819 mRNA upstream 92922 16969820 ~ 16976960 (+) True AMCG00001819
AMCG00001818 mRNA upstream 118371 16946524 ~ 16951511 (+) True AMCG00001818
AMCG00001820 mRNA upstream 172074 16870396 ~ 16897808 (+) True AMCG00001820
AMCG00001837 mRNA downstream 3558 17074216 ~ 17092598 (+) True AMCG00001837
AMCG00001839 mRNA downstream 23906 17094564 ~ 17098333 (+) True AMCG00001839
AMCG00001838 mRNA downstream 73583 17144241 ~ 17160791 (+) True AMCG00001838
AMCG00001840 mRNA downstream 106557 17177215 ~ 17179413 (+) True AMCG00001840
AMCG00001841 mRNA downstream 108936 17179594 ~ 17181775 (+) True AMCG00001841
TU202141 other upstream 697578 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 774376 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1630851 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1735315 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2799692 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 346693 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1117244 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1145917 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1599624 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 1828679 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile